Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0629
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    28   5.1  
AL032626-18|CAA21543.2|  458|Caenorhabditis elegans Hypothetical...    27   9.0  

>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical protein
            K06C4.15 protein.
          Length = 1067

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 523  LPKPMTSQFEYQPSPCVVFLSAGRDLYGA 437
            +P+ +T+ FEY+    ++F  A +D+Y A
Sbjct: 964  VPRRLTTDFEYKEIQLLIFSDASQDIYAA 992


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 20/70 (28%), Positives = 24/70 (34%)
 Frame = -3

Query: 499 FEYQPSPCVVFLSAGRDLYGAF*LDYVPPFFPDLYAVDSDIDAGVQCRLNLIASAHGTTL 320
           F+Y    C    S      G F  D     F D Y   + I  G  CR  LI+       
Sbjct: 166 FDYYGDKCQTTRSVQTSYVGCF--DDSSASFSDYYVYSTTITTGTDCRDALISYREANPT 223

Query: 319 SRPLSSTLPG 290
           S    ST+ G
Sbjct: 224 SNYAYSTMSG 233


>AL032626-18|CAA21543.2|  458|Caenorhabditis elegans Hypothetical
           protein Y37D8A.22 protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 249 IDRRILWWSWYSFIPGKVDERGLES 323
           I++ ILWWSW+  + G +   GL S
Sbjct: 117 IEKHILWWSWWVLL-GVLSSIGLGS 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,604,657
Number of Sequences: 27780
Number of extensions: 331964
Number of successful extensions: 791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)