Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0629
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32310.1 68415.m03950 expressed protein                             29   2.1  
At3g21175.2 68416.m02676 zinc finger (GATA type) family protein ...    28   6.4  
At3g21175.1 68416.m02675 zinc finger (GATA type) family protein ...    28   6.4  
At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger) fa...    28   6.4  
At1g27595.1 68414.m03365 expressed protein similar to Symplekin ...    28   6.4  
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    27   8.4  

>At2g32310.1 68415.m03950 expressed protein
          Length = 325

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 541 PTGIRLLPKPMTSQFEYQPSPCVVFLSA 458
           P  I   P+P+ SQF+YQP P  + LS+
Sbjct: 38  PLNINPRPEPVPSQFQYQPPPPQLPLSS 65


>At3g21175.2 68416.m02676 zinc finger (GATA type) family protein
           similar to zinc finger protein ZIM gi:8918533 from
           [Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
           finger
          Length = 295

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 187 ISLAMNSSVFPFDRNSPEHQKLIVVFYGGAGI-HSSP 294
           ++L+    V+ FDR SPE  + +++  GG  + H+ P
Sbjct: 80  LTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLP 116


>At3g21175.1 68416.m02675 zinc finger (GATA type) family protein
           similar to zinc finger protein ZIM gi:8918533 from
           [Arabidopsis thaliana]; contains Pfam PF00320: GATA zinc
           finger
          Length = 297

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 187 ISLAMNSSVFPFDRNSPEHQKLIVVFYGGAGI-HSSP 294
           ++L+    V+ FDR SPE  + +++  GG  + H+ P
Sbjct: 80  LTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLP 116


>At3g05200.1 68416.m00567 zinc finger (C3HC4-type RING finger)
           family protein (ATL6) contains Pfam profile: PF00097:
           Zinc finger, C3HC4 type (RING finger)
          Length = 398

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 276 SSTIKYDDQFLMFRAVPIKWENARVHCERNGLN 178
           S +++  D++   R     W N+ VH  R G+N
Sbjct: 341 SDSVRAGDRWAFLRNASFLWRNSSVHVPRGGVN 373


>At1g27595.1 68414.m03365 expressed protein similar to Symplekin
           (SP:Q92797) {Homo sapiens}
          Length = 1091

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +2

Query: 32  LFSMNHQS--NDYLVLHTLYYSTALLLAETSLRATEATNRRNVSFTGGGKSFSPFLSQ*T 205
           L S++H+      LVLH LY+  ++ + +T   +  AT   N       +SF   L    
Sbjct: 566 LISVDHREFKGHDLVLHVLYHLHSMAILDTDESSFYATVYENF-LISVARSFLDALPASD 624

Query: 206 RAFSHLIGTALNIKN*SSYFMVEL 277
           ++FS L G A ++ + +   + EL
Sbjct: 625 KSFSRLFGEAPHLPDSAINLLDEL 648


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
            similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
 Frame = +2

Query: 83   YYSTALLLAETSLRATEATNRRNVSF------TGGGKSFSPFLSQ*TRAFSHLIGTA--- 235
            Y    + L    L + EATNRRN +F        GG++   +     R  S L G +   
Sbjct: 862  YVDRLMPLVLKELGSPEATNRRNAAFCVGELCKNGGETALKYFGDVLRGISPLFGDSEPD 921

Query: 236  LNIKN*SSYFMVELVFIHPR 295
            L +++ ++     ++ +HP+
Sbjct: 922  LAVRDNAAGATARMIVVHPQ 941


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,840
Number of Sequences: 28952
Number of extensions: 321659
Number of successful extensions: 767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)