Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0628
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    27   2.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.7  
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    25   8.3  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       25   8.3  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.3  
SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    25   8.3  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -1

Query: 204 ITNVPILAVKQSCLFKARTVVRRPKRHTWSFHW-W*AFLGVRTGKYHHP 61
           I N+P  ++K+  LFK  T +  P+ + +++H+    F G+    +H P
Sbjct: 236 IKNIPF-SLKKEVLFKVFTALDIPRPYAFNYHFDNGVFRGLAFANFHSP 283


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 337  RGWDYKFKIIKIRQVPIFLRKLC*FIILLNYWIVFLLWI 221
            R W Y + I  I Q  IFL  +  +I+L    +  L WI
Sbjct: 2218 RSWSYLWDIGNIHQWQIFLLIVAFYIVLWALLLGVLAWI 2256


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 149 QSSGDLNVIPGHFTGGRPSWESARV 75
           Q S  + VI  HF   R  WE+ARV
Sbjct: 16  QQSESVEVIKRHFREFRKIWETARV 40


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 449 RFSISSKEGIYKEIGHVIISHGDHRIPTDFYA*EV--MLSWV 330
           RF+   ++ +   +  VI  + DH+I T+ +  EV  M SW+
Sbjct: 311 RFARPEEDDLADTLSSVITDYLDHKIKTETFHEEVKQMYSWI 352


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 333 PRKHDFLSVEISRDSVVTVTDNN 401
           PR  D L +E S++S+V  T NN
Sbjct: 77  PRAEDLLVIEPSQNSLVPSTQNN 99


>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 646 LTRLSYKTVRLLIQNTHANWYFKNKL 723
           + +  +KT R+ I N H+ W + N L
Sbjct: 44  IPKFGHKTRRVWIPNGHSKWLYSNVL 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,994
Number of Sequences: 5004
Number of extensions: 60911
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)