Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0628
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    30   2.1  
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773...    28   8.6  
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601...    28   8.6  

>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
            33319949-33320011,33320103-33320496,33320684-33320796,
            33320932-33321639,33321667-33323199,33323395-33323607,
            33323718-33324700,33324890-33325423,33325694-33325820,
            33326083-33326162,33327347-33327377,33327949-33328053,
            33328119-33328124,33328349-33328985,33329144-33329478,
            33330394-33331113
          Length = 2792

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/69 (28%), Positives = 36/69 (52%)
 Frame = +3

Query: 345  DFLSVEISRDSVVTVTDNNMADLLVNSFFTGYTESVIYDFELQLLFSICSHMCNGRCRSL 524
            DF+ V +  +  ++  D+++A  L     +G T  ++YD+E   L SI S   + +CR  
Sbjct: 1863 DFVQV-VKVEKNISQADSSLAGRLSQGHHSG-TPCIVYDWESPELVSILSTFSSKKCRE- 1919

Query: 525  KLMYLYFVI 551
              +YL  V+
Sbjct: 1920 NCVYLLEVL 1928


>10_08_0829 -
           20871810-20872011,20873226-20873359,20873480-20877313,
           20878057-20878177,20878414-20878451,20879096-20879218,
           20879308-20879505,20880270-20880356
          Length = 1578

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 617 AHVSSLTHSSILIGREILPNN 555
           A +S+L+H+S LI  E+ PNN
Sbjct: 461 AEISNLSHTSDLIDHEVSPNN 481


>05_04_0299 -
           19958776-19958858,19958883-19959012,19960131-19960175,
           19960252-19960370,19960450-19960543,19961824-19961985,
           19962117-19962266,19962472-19962537,19962934-19962981,
           19963654-19963866,19963953-19964078,19964155-19964232,
           19964600-19964671,19965522-19965953,19966863-19966925,
           19967497-19967898
          Length = 760

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = -2

Query: 650 VRDQYFYPIAPAHVSSLTHSSILIGREILPNNTNDKIQIH*FQRSTSS 507
           VR    + + P+H++ +   SI++  E +P   + +  +H  +  TSS
Sbjct: 648 VRPSKLHELFPSHITEVLQQSIIMIEEEMPGFVSSEALLHGVETRTSS 695


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,630,570
Number of Sequences: 37544
Number of extensions: 363376
Number of successful extensions: 716
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)