Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0628
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73911-5|CAL49431.1|  329|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     28   7.8  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    28   7.8  

>Z73911-5|CAL49431.1|  329|Caenorhabditis elegans Hypothetical
           protein T12A7.4a protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 360 EISRDSVVTVTDNNMADLLVNSFFTGYTESVIY 458
           + S+D V+    N+ A L  N+F TG+T +V Y
Sbjct: 65  DTSKDPVIFFHGNSDAALTANNFSTGWTTTVQY 97


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 13  PTIRTETHYCFTAEIGGVVVLTRADSQEGLPPVK*PGMTF 132
           P+I  E+H+ +     G  VL R  S    PP + P   F
Sbjct: 335 PSIDVESHFTYAQTQNGQKVLARTQSTSTSPPPQAPASAF 374


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
           abnormal morphology protein19 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 13  PTIRTETHYCFTAEIGGVVVLTRADSQEGLPPVK*PGMTF 132
           P+I  E+H+ +     G  VL R  S    PP + P   F
Sbjct: 335 PSIDVESHFTYAQTQNGQKVLARTQSTSTSPPPQAPASAF 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,199
Number of Sequences: 27780
Number of extensions: 341341
Number of successful extensions: 684
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)