Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0628
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                31   0.008
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.72 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    24   1.7  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   6.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   6.7  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   8.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 31.5 bits (68), Expect = 0.008
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 155 LGQSSGDLNVIPGHFTGGRPSWESARVSTTTPP 57
           LG  +G    +PGH   GRPS+ +A ++TT+ P
Sbjct: 204 LGVQNGYGRHLPGHAQMGRPSYTTATMATTSTP 236


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 25.0 bits (52), Expect = 0.72
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 158 KLGQSSGDLNVIPGHFTGGRPSWESARVSTTTPPI 54
           +LG   G ++ I  H      +WE  R  T  PPI
Sbjct: 609 RLGYQKGGISEIQKHKWFDGFNWEGLRARTLEPPI 643


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 719 LFLKYQLACVF*ISNRTVL*DSRVRDQYFYPIAPAHVSSLTHSSILIGREILP 561
           LFL + +A VF     T++  + VR++Y +      V+SL  +  L+G  ++P
Sbjct: 52  LFL-FSVATVF---GNTLVILAVVRERYLHTATNYFVTSLAFADCLVGLVVMP 100


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 254 ENNKLAQFSQKYWYLPNFNNFKF 322
           +NNK  +    YW +P F   K+
Sbjct: 35  DNNKTVREFNVYWNVPTFMCHKY 57


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 464 KIVDNRFSISSKEGIYKEIGHVIISHGDHRIPTDFY 357
           K V NR+ +   E +  ++G V     DH IPT +Y
Sbjct: 263 KQVLNRYYL---ERLSNDMGEVSYVSLDHPIPTGYY 295


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 464 KIVDNRFSISSKEGIYKEIGHVIISHGDHRIPTDFY 357
           K V NR+ +   E +  ++G V     DH IPT +Y
Sbjct: 263 KQVLNRYYL---ERLSNDMGEVSYVSLDHPIPTGYY 295


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 541 YRYINFKDRHRPLH 500
           Y Y N+ + ++PLH
Sbjct: 322 YNYNNYNNNYKPLH 335


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 524 QRSTSSIAHV*TYAEQQLKLKIVDNRFSISSKEGIYKEI 408
           +R    IAH     E+Q+K+   + R  +  +    KEI
Sbjct: 35  RRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEI 73


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 81  CGLPRRPTTSEMTRYDV 131
           CG+  +P   E+T Y V
Sbjct: 283 CGIDSKPDYRELTEYSV 299


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 428  EGIYKEIGHVIISHGD 381
            E +Y+ + H+I +HG+
Sbjct: 1079 EDVYQTLKHIIQTHGE 1094


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,793
Number of Sequences: 438
Number of extensions: 4275
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)