Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0628
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP...    28   5.5  
At1g71040.1 68414.m08199 multi-copper oxidase type I family prot...    27   9.5  
At1g23010.1 68414.m02875 multi-copper oxidase type I family prot...    27   9.5  

>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
           (VPS41) 99.8% identical to Vacuolar assembly protein
           VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
           similar to vacuolar assembly protein vps41 GI:1835787
           from [Lycopersicon esculentum]
          Length = 980

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 448 RLSTILSFNCCSAYVHTCAMD 510
           R  T++ F CC AY  TC MD
Sbjct: 898 RGDTVVVFFCCHAYHETCLMD 918


>At1g71040.1 68414.m08199 multi-copper oxidase type I family protein
           similar to SP|P07788 Spore coat protein A {Bacillus
           subtilis}; contains Pfam profile PF00394: Multicopper
           oxidase
          Length = 581

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 194 TLVISTCAKYPK*KYDPVIKENNKLAQFSQKY 289
           T +++  A YP    DPV +EN+K+ +F   Y
Sbjct: 357 TAILANNAPYPYPSGDPVTEENSKVMKFIINY 388


>At1g23010.1 68414.m02875 multi-copper oxidase type I family protein
           similar to SP|P07788 Spore coat protein A {Bacillus
           subtilis}; contains Pfam profile PF00394: Multicopper
           oxidase
          Length = 581

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 170 DCFTAKIGTLVISTCAKYPK*KYDPVIKENNKLAQF 277
           D + +   T+V++  A YP    DPV +EN K+ +F
Sbjct: 347 DFYKSPSRTVVLANDAPYPYPSGDPVNEENGKVMKF 382


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,998
Number of Sequences: 28952
Number of extensions: 304255
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)