Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0626
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein S15|S...    42   2e-05
SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein S15|Schizosac...    42   3e-05
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    23   8.3  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    23   8.3  
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism...    23   8.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    23   8.3  

>SPAC1071.07c |rps1502|rps15-2, rps15|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 41.9 bits (94), Expect = 2e-05
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = +2

Query: 188 AKKEAPSNEKPEIVKTHLRNMII 256
           AK EAP NEKP  VKTHLRNMII
Sbjct: 72  AKSEAPLNEKPATVKTHLRNMII 94



 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +3

Query: 258 VPEMVGSIVGIYNGKTFN 311
           +PEMVGS+VGIYNGK FN
Sbjct: 95  LPEMVGSVVGIYNGKLFN 112



 Score = 31.1 bits (67), Expect = 0.041
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 55  GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
           GV+L+QLLD+  EQL++L H         GL         KLR
Sbjct: 28  GVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLR 70


>SPCC1393.03 |rps1501|rps15-1|40S ribosomal protein
           S15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 153

 Score = 41.5 bits (93), Expect = 3e-05
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = +2

Query: 188 AKKEAPSNEKPEIVKTHLRNMII 256
           AK EAP NEKP  VKTHLRNMII
Sbjct: 71  AKTEAPLNEKPATVKTHLRNMII 93



 Score = 37.9 bits (84), Expect = 4e-04
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +3

Query: 258 VPEMVGSIVGIYNGKTFN 311
           +PEMVGS+VGIYNGK FN
Sbjct: 94  LPEMVGSVVGIYNGKLFN 111



 Score = 31.1 bits (67), Expect = 0.041
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 55  GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
           GV+L+QLLD+  EQL++L H         GL         KLR
Sbjct: 27  GVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLR 69


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 223 DREDSLEKHDHSFPRWSVQLLGFTTEK 303
           DR+  L      FP W++  L F  E+
Sbjct: 77  DRDSQLSVLQELFPSWTIDDLSFALEE 103


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 55  GVDLDQLLDMPNEQLMELMH 114
           G+D+D L D+ NE+   ++H
Sbjct: 26  GLDIDDLWDIYNEKTRRMIH 45


>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 164 HWGGSCVPAKKEAPSNEKPEIV 229
           HW  + +   +E P NEK E++
Sbjct: 117 HWPFALLSGPEELPRNEKGELI 138


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 105 FHELLIGHIKELIEINS 55
           F EL IG +KEL  +NS
Sbjct: 401 FEELAIGLVKELHRVNS 417


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,441
Number of Sequences: 5004
Number of extensions: 23839
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)