Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0626
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0604 - 4491884-4491993,4493030-4493225,4494269-4494326,449... 44 3e-05
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 44 3e-05
10_08_0318 + 16706714-16706845,16707590-16708405,16708493-167086... 29 0.58
11_04_0117 + 13610168-13610752,13622181-13622240,13622241-13622534 29 1.0
05_04_0331 + 20317482-20318174,20318518-20318685,20318773-203188... 27 2.3
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 27 4.1
07_03_0313 + 16620817-16621515 27 4.1
03_06_0582 - 34891613-34891795,34892407-34892466,34893134-348932... 26 5.4
09_04_0466 - 17838344-17838631 26 7.1
09_04_0070 + 14308446-14308511,14308844-14309005,14309420-143094... 25 9.4
07_03_1490 - 26941322-26941417,26941850-26942377,26944590-269448... 25 9.4
07_03_1488 - 26925166-26925729,26927946-26928184,26929247-269296... 25 9.4
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980... 25 9.4
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164... 25 9.4
>07_01_0604 -
4491884-4491993,4493030-4493225,4494269-4494326,
4494459-4494613,4495092-4495115,4495377-4495489,
4499943-4500129
Length = 280
Score = 44.0 bits (99), Expect = 3e-05
Identities = 27/55 (49%), Positives = 31/55 (56%)
Frame = +1
Query: 19 KKAYFQGSSLTGGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
KK F+ S G VDLD LLDM + L++L GLKRKPMAL KLR
Sbjct: 124 KKRTFRKYSYRG-VDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLR 177
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2
Query: 188 AKKEAPSNEKPEIVKTHLRNMII 256
AKK+AP+ EKPE V+THLRNMII
Sbjct: 179 AKKDAPAGEKPEPVRTHLRNMII 201
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 258 VPEMVGSIVGIYNGKTFN 311
VPEM+GSIVG+YNGKTFN
Sbjct: 202 VPEMIGSIVGVYNGKTFN 219
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 44.0 bits (99), Expect = 3e-05
Identities = 27/55 (49%), Positives = 31/55 (56%)
Frame = +1
Query: 19 KKAYFQGSSLTGGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
KK F+ S G VDLD LLDM + L++L GLKRKPMAL KLR
Sbjct: 252 KKRTFRKYSYRG-VDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLR 305
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/18 (88%), Positives = 18/18 (100%)
Frame = +3
Query: 258 VPEMVGSIVGIYNGKTFN 311
VPEM+GSIVG+YNGKTFN
Sbjct: 351 VPEMIGSIVGVYNGKTFN 368
Score = 40.3 bits (90), Expect = 3e-04
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +2
Query: 191 KKEAPSNEKPEIVKTHLRNMII 256
KK+AP+ EKPE V+THLRNMII
Sbjct: 329 KKDAPAGEKPEPVRTHLRNMII 350
>10_08_0318 +
16706714-16706845,16707590-16708405,16708493-16708666,
16708809-16708934,16709084-16709185
Length = 449
Score = 29.5 bits (63), Expect = 0.58
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = -3
Query: 190 GGDAASPPMP-----LVYV*DHERTAGAHGHALIP*VAHWAYQGADRDQLP 53
GGD SPP+P L + + + GA G L+P + +A+ D Q P
Sbjct: 104 GGDTLSPPLPSLDSTLSALLEQDEPPGADGELLLP-IDDYAFSAVDETQPP 153
>11_04_0117 + 13610168-13610752,13622181-13622240,13622241-13622534
Length = 312
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 17 KKKRIFREVHLPGELISISSLICPMSNSW 103
+KK + LP EL+ + + +CP S W
Sbjct: 47 EKKLVAAAAGLPSELLDVKATVCPTSLGW 75
>05_04_0331 +
20317482-20318174,20318518-20318685,20318773-20318895,
20319094-20319165,20321217-20321431,20321521-20321593,
20322092-20322568,20322970-20323077,20323184-20323192,
20323193-20323552
Length = 765
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 56 ELISISSLICPM-SNSWN*CMPVRAGGSLVVLNVNQWHWGGSCVPAKKE 199
E+I I L+C + S WN + + A ++ + VN+ HW V K E
Sbjct: 325 EVIEILHLVCHLWSLDWNEKIILSAYATIFIPIVNEGHWSLVVVTIKPE 373
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -1
Query: 186 GTQLPPQCHWFTFKTTSEPPARTGMH 109
G+ L P HW +S PPA + H
Sbjct: 322 GSSLSPHSHWPVAALSSSPPAPSSSH 347
>07_03_0313 + 16620817-16621515
Length = 232
Score = 26.6 bits (56), Expect = 4.1
Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Frame = -3
Query: 211 IGRSLFLGGD------AASPPMPLVYV*DHERTAGAHGHALIP*VAHWAYQGADRDQLPR 50
+G F GG+ A P MP VY R G P VA WA + +RD +
Sbjct: 152 LGEKEFFGGEFGFVDVALVPMMPWVY--SFARYGGFSVEEECPRVAAWARRCMERDSVAG 209
Query: 49 *VNFPENTLFFEGFV 5
+ PE F G +
Sbjct: 210 SLRSPEEIYDFIGLL 224
>03_06_0582 -
34891613-34891795,34892407-34892466,34893134-34893280,
34893502-34893657,34893745-34893828,34893907-34893995,
34894575-34894689,34894776-34894899,34895080-34895219,
34895868-34895929,34896042-34896108,34896185-34896295,
34896868-34896945,34897074-34897274,34897492-34897563,
34897630-34897693,34898084-34898154,34898328-34898474
Length = 656
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -1
Query: 291 KSQQLNRPSRERMIMFLK*VFTISGFSLEGASFLAGTQLPPQ-CHWFTFKTTSEPPARTG 115
KS Q++ + +I + F+++G + + + + + P C W KT +PP G
Sbjct: 236 KSAQVSSCAGHSLISWGNKFFSVAGHTKDPSENITVKEFDPHTCTWSIVKTYGKPPVSRG 295
>09_04_0466 - 17838344-17838631
Length = 95
Score = 25.8 bits (54), Expect = 7.1
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -2
Query: 212 HWKEPLSWRGR 180
HW++ L+WRGR
Sbjct: 16 HWRQALTWRGR 26
>09_04_0070 +
14308446-14308511,14308844-14309005,14309420-14309473,
14310009-14310073,14310391-14310459,14310590-14310767,
14311085-14311231,14311316-14311432,14311507-14311619,
14311703-14311781,14311892-14312020
Length = 392
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 134 SLVVLNVNQWHWGGSCVPAKKEAPSNEKP 220
S +V+ + Q S PA +APSN+ P
Sbjct: 68 SFLVIMLRQGKGSSSSAPATSKAPSNQAP 96
>07_03_1490 -
26941322-26941417,26941850-26942377,26944590-26944828,
26945891-26946318,26946728-26946837
Length = 466
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 59 LISISSLICPMSNSWN*CMPVRAGGSLVVLNVNQWHW 169
LIS SL+ + SW P+ A G VV V+++ W
Sbjct: 4 LISSPSLMASAAASWCWWSPLLARGGPVVRRVSRFPW 40
>07_03_1488 -
26925166-26925729,26927946-26928184,26929247-26929674,
26930084-26930193
Length = 446
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 59 LISISSLICPMSNSWN*CMPVRAGGSLVVLNVNQWHW 169
LIS SL+ + SW P+ A G VV V+++ W
Sbjct: 4 LISSPSLMASAAASWCWWSPLLARGGPVVRRVSRFPW 40
>06_03_1274 +
28897491-28897707,28897804-28897935,28898029-28898096,
28898216-28898280,28898468-28898534,28898630-28898917,
28898995-28899102,28899236-28899487,28899918-28899997,
28900092-28900185,28900728-28900810,28901319-28901873,
28902085-28902616
Length = 846
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 265 SGTNDHVSQVSLHDLWLLIGRSLFLGGDAASPPMPL 158
SG D Q S+H LWL L DA +P + +
Sbjct: 535 SGNGDGDYQNSIHSLWLANTEKKLLRMDAMAPRLSI 570
>01_06_1776 -
39815634-39815714,39815761-39815927,39816278-39816496,
39816614-39816680,39816771-39816932
Length = 231
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 238 LEKHDHSFPRWSVQLLG-FTTEKL 306
L+K D S RW QLLG TE+L
Sbjct: 52 LDKDDESLRRWKEQLLGQVDTEQL 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,458,604
Number of Sequences: 37544
Number of extensions: 196479
Number of successful extensions: 514
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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