Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0626
(315 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 5e-07
SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4
SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.6
SB_17980| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.4
SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033) 26 7.4
SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26) 26 7.4
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
SB_43275| Best HMM Match : GoLoco (HMM E-Value=3) 25 9.8
SB_3587| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.8
>SB_29066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 49.6 bits (113), Expect = 5e-07
Identities = 25/50 (50%), Positives = 33/50 (66%)
Frame = +1
Query: 55 GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLRPRQERGS 204
GVDLDQLLD+ +EQLMEL+ GLKRKP+AL +LR ++ +
Sbjct: 23 GVDLDQLLDLSHEQLMELVCCRQRRRFTRGLKRKPLALMKRLRKAKKEAA 72
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = +2
Query: 188 AKKEAPSNEKPEIVKTHLRNMII 256
AKKEA EKPE+VKTHLRNMII
Sbjct: 67 AKKEAAPMEKPEVVKTHLRNMII 89
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/17 (82%), Positives = 17/17 (100%)
Frame = +3
Query: 258 VPEMVGSIVGIYNGKTF 308
VPEM+GS+VG+YNGKTF
Sbjct: 90 VPEMIGSVVGVYNGKTF 106
>SB_3866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1178
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 231 FTISGFSLEGASFLAGTQLPPQCHW 157
F + GF+ A+F+ +P +CHW
Sbjct: 777 FIVCGFTDTAATFIHERIMPDECHW 801
>SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 131 GSLVVLNVNQWHWGGSCVPAKKEAPSNEKPEIVKTHLRNMIIRSRDGR 274
G + V+N + + + A+ P N +P +TH RN+ + SRD R
Sbjct: 137 GEMTVMNAEELRELNNIIRAELRTP-NGRP---RTHSRNLSVLSRDSR 180
>SB_41628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 690
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 80 ICPMSNSWN*CMPVRAGGSLVVLNVNQWHWGGSCVPAKK 196
+ P S++W+ + + GG +Q HW SCV A+K
Sbjct: 413 LSPNSSAWS--VLCKCGGIWCFKCGSQAHWPASCVEARK 449
>SB_36862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 26.2 bits (55), Expect = 5.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 247 VSQVSLHDLWLLIGRSLFLGGDAASPPMPLVY 152
V + HD W L+ S+FL A + +P+++
Sbjct: 493 VQETLFHDPWKLLVSSIFLNRTAGTQAIPIMW 524
>SB_17980| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 216 FSLEGASFLAGTQLPPQCHWFTFKTTSEPP 127
F G S +G +L P CH F +E P
Sbjct: 72 FRCGGVSLASGNRLKPHCHQFISGGPTETP 101
>SB_56664| Best HMM Match : bZIP_1 (HMM E-Value=0.00033)
Length = 652
Score = 25.8 bits (54), Expect = 7.4
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 58 VDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLRPRQERG 201
+DL QL+D PN+Q++E G+K++P K+ P+ G
Sbjct: 178 LDLFQLVDQPNKQILE-----NPGAEQHGVKQEPSTPTNKMCPQSCAG 220
>SB_10571| Best HMM Match : Cas1p (HMM E-Value=1.8e-26)
Length = 765
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 259 TNDHVSQVSLHDLWLLIGRSLFLGGDAASPPMPLV 155
+N+++S + L +L G +LGGDA +PL+
Sbjct: 720 SNNNLSDLQLTVRYLQTGPPRYLGGDALRVQLPLL 754
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 173 GSCVPAKKEAPSNEKPEIVKTH-LRNMIIRSRDGRFNCWD 289
G+CV K+ S E ++ + L+ +I +RDG WD
Sbjct: 173 GTCVAHYKDLHSREITAVLFFNPLKYLITAARDGSIKVWD 212
>SB_43275| Best HMM Match : GoLoco (HMM E-Value=3)
Length = 85
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 217 ARDREDSLEKHDHSFPRWSV 276
+R + S+ H+ FPRWS+
Sbjct: 35 SRKKNSSVNDHNSQFPRWSL 54
>SB_3587| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 217 ARDREDSLEKHDHSFPRWSV 276
+R + S+ H+ FPRWS+
Sbjct: 105 SRKKNSSVNDHNSQFPRWSL 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,950,471
Number of Sequences: 59808
Number of extensions: 181097
Number of successful extensions: 365
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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