Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0626
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical pr...    40   3e-04
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    29   0.93 
AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    27   2.1  
Z81071-1|CAB03014.2|  510|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AY523513-1|AAR98635.1|  510|Caenorhabditis elegans acetylcholine...    26   6.6  
U80027-2|AAC48132.1|  208|Caenorhabditis elegans Glutathione s-t...    25   8.7  
AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.      25   8.7  
AF039716-8|AAB96738.1|  384|Caenorhabditis elegans Paf-acetylhyd...    25   8.7  

>Z81077-5|CAB03065.1|  151|Caenorhabditis elegans Hypothetical
           protein F36A2.6 protein.
          Length = 151

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = +1

Query: 55  GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
           GVDLDQLLDM  EQ  +L+          GLKRK +AL  K++
Sbjct: 25  GVDLDQLLDMSREQFTKLLPCRMRRRLDRGLKRKHLALIAKVQ 67



 Score = 35.1 bits (77), Expect = 0.011
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +3

Query: 258 VPEMVGSIVGIYNGKTFN 311
           +PE+VG ++GIYNGK FN
Sbjct: 92  LPELVGGVIGIYNGKVFN 109



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 14  LKKKRIFREVHLPGELISISSLICPMSNSWN*CMPVRAGGSLVVLNVNQWHWG--GSCVP 187
           LKKKR FR+    G  + +  L+      +   +P R    L    + + H         
Sbjct: 12  LKKKRTFRKFMYRG--VDLDQLLDMSREQFTKLLPCRMRRRLD-RGLKRKHLALIAKVQK 68

Query: 188 AKKEAPSNEKPEIVKTHLRNMII 256
           AKK A   EKP  VKTHLR+MII
Sbjct: 69  AKKAAGVLEKPATVKTHLRDMII 91


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
            protein Y81G3A.3 protein.
          Length = 1696

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 194  KEAPSNEKPEIVKTHLRNMIIRSRDGRFNCWDLQRK 301
            ++ P + K +    +L   +I+ RDGR N W L ++
Sbjct: 997  EDLPMHTKEDATFRNLCEKVIKKRDGRMNAWLLDKQ 1032


>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = +2

Query: 137 LVVLNVNQW-HWGGSCVPAKKEAPSN 211
           L VLN   W HW G+C P     P N
Sbjct: 465 LPVLNEQVWGHWQGTCQPFASSQPCN 490


>Z81071-1|CAB03014.2|  510|Caenorhabditis elegans Hypothetical
           protein F28F8.1 protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 129 PARTGMH*FHE-LLIGHIKELIEINSPGK*TSLKIRFFLR 13
           PART M   +E L + ++KE+  + +  +   ++I+F+L+
Sbjct: 25  PARTPMRNLYEHLFLDYVKEIRPVRNESESLKVEIKFWLK 64


>AY523513-1|AAR98635.1|  510|Caenorhabditis elegans acetylcholine
           receptor, one ofnine alpha a7-like nicotinic
           acetylcholine receptor subunits(58.6 kD) (acr-18)
           protein.
          Length = 510

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 129 PARTGMH*FHE-LLIGHIKELIEINSPGK*TSLKIRFFLR 13
           PART M   +E L + ++KE+  + +  +   ++I+F+L+
Sbjct: 25  PARTPMRNLYEHLFLDYVKEIRPVRNESESLKVEIKFWLK 64


>U80027-2|AAC48132.1|  208|Caenorhabditis elegans Glutathione
           s-transferase protein23 protein.
          Length = 208

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 47  LPGELISISSLICPMSNSWN 106
           LPGEL+ I  L C  +N  N
Sbjct: 121 LPGELLRIEKLFCTFNNGEN 140


>AF386744-1|AAL57289.1|  384|Caenorhabditis elegans PAF-1 protein.
          Length = 384

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 137 LVVLNVNQWHWGGSCVPAKKEAPSNE 214
           ++ LNV  W W  +    +K  P+NE
Sbjct: 275 IMFLNVGDWQWNENLEVMRKILPNNE 300


>AF039716-8|AAB96738.1|  384|Caenorhabditis elegans
           Paf-acetylhydrolase protein 1 protein.
          Length = 384

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 137 LVVLNVNQWHWGGSCVPAKKEAPSNE 214
           ++ LNV  W W  +    +K  P+NE
Sbjct: 275 IMFLNVGDWQWNENLEVMRKILPNNE 300


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,452,666
Number of Sequences: 27780
Number of extensions: 139157
Number of successful extensions: 322
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)