Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0626
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   3.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   4.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   6.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 241 EKHDHSFPRWSVQLLGFTTEKLL 309
           E HD  +   +++ LGF TE LL
Sbjct: 202 EDHDDHYGVPTLEELGFDTEGLL 224


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 19  KKAYFQGSSLTGGVDLDQLLDMP 87
           +K YF G      VD D+ L  P
Sbjct: 301 QKRYFFGRDSVDHVDFDEFLPPP 323


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 4/8 (50%), Positives = 7/8 (87%)
 Frame = +2

Query: 146 LNVNQWHW 169
           +N++ WHW
Sbjct: 205 INLHHWHW 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,992
Number of Sequences: 438
Number of extensions: 1733
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)