Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0626
(315 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B) ribo... 46 4e-06
At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D) ribo... 42 9e-05
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo... 42 1e-04
At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Stro... 42 1e-04
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 41 2e-04
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim... 39 6e-04
At5g63070.1 68418.m07914 40S ribosomal protein S15, putative 36 0.004
At1g07280.1 68414.m00774 expressed protein 27 2.0
At5g25970.1 68418.m03089 hypothetical protein contains Pfam prof... 27 2.6
At4g02130.2 68417.m00285 glycosyl transferase family 8 protein l... 26 4.6
At4g02130.1 68417.m00284 glycosyl transferase family 8 protein l... 26 4.6
At1g05430.1 68414.m00551 expressed protein 26 4.6
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 26 6.1
At4g14990.1 68417.m02303 expressed protein 26 6.1
At4g34030.1 68417.m04829 methylcrotonyl-CoA carboxylase beta cha... 25 8.1
At1g19300.1 68414.m02400 glycosyl transferase family 8 protein c... 25 8.1
>At5g09490.1 68418.m01098 40S ribosomal protein S15 (RPS15B)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/55 (50%), Positives = 31/55 (56%)
Frame = +1
Query: 19 KKAYFQGSSLTGGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
KK F+ S G VDLD LLDMP + L+EL GL RKPMAL KLR
Sbjct: 15 KKRTFKKFSFKG-VDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLR 68
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 188 AKKEAPSNEKPEIVKTHLRNMII 256
AK +AP+ EKPE+V+THLRNM+I
Sbjct: 70 AKLDAPAGEKPEVVRTHLRNMVI 92
Score = 39.5 bits (88), Expect = 5e-04
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = +3
Query: 258 VPEMVGSIVGIYNGKTFN 311
+PEM+GSI+G+YNGKTFN
Sbjct: 93 MPEMIGSIIGVYNGKTFN 110
>At5g09510.1 68418.m01100 40S ribosomal protein S15 (RPS15D)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 152
Score = 41.9 bits (94), Expect = 9e-05
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2
Query: 188 AKKEAPSNEKPEIVKTHLRNMII 256
AK+EAP+ EKPE V+THLRNMII
Sbjct: 70 AKREAPAGEKPEPVRTHLRNMII 92
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/43 (51%), Positives = 25/43 (58%)
Frame = +1
Query: 55 GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
GVDLD LLDM + L++L GL RKPMAL KLR
Sbjct: 26 GVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLR 68
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 258 VPEMVGSIVGIYNGKTFN 311
VPEM+GSI+G+YNGKTFN
Sbjct: 93 VPEMIGSIIGVYNGKTFN 110
>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
ribosomal protein S15 - Arabidopsis thaliana,
EMBL:Z23161
Length = 150
Score = 41.5 bits (93), Expect = 1e-04
Identities = 26/55 (47%), Positives = 30/55 (54%)
Frame = +1
Query: 19 KKAYFQGSSLTGGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
KK F+ S G VDLD LLDM + L++L GL RKPMAL KLR
Sbjct: 13 KKRTFKKFSFRG-VDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLR 66
Score = 40.3 bits (90), Expect = 3e-04
Identities = 14/18 (77%), Positives = 18/18 (100%)
Frame = +3
Query: 258 VPEMVGSIVGIYNGKTFN 311
VPEM+GS++G+YNGKTFN
Sbjct: 91 VPEMIGSVIGVYNGKTFN 108
Score = 38.3 bits (85), Expect = 0.001
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2
Query: 188 AKKEAPSNEKPEIVKTHLRNMII 256
AK EAP+ EKP V+THLRNMII
Sbjct: 68 AKIEAPAGEKPAAVRTHLRNMII 90
>At1g04270.1 68414.m00418 40S ribosomal protein S15 (RPS15A) Strong
similarity to Oryza 40S ribosomal protein S15. ESTs
gb|R29788,gb|ATTS0365 come from this gene
Length = 152
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +2
Query: 188 AKKEAPSNEKPEIVKTHLRNMII 256
AK+EAP EKPE V+THLRNMII
Sbjct: 70 AKREAPQGEKPEPVRTHLRNMII 92
Score = 41.1 bits (92), Expect = 2e-04
Identities = 22/43 (51%), Positives = 25/43 (58%)
Frame = +1
Query: 55 GVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
GVDLD LLDM + L++L GL RKPMAL KLR
Sbjct: 26 GVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLR 68
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 258 VPEMVGSIVGIYNGKTFN 311
VPEM+GSI+G+YNGKTFN
Sbjct: 93 VPEMIGSIIGVYNGKTFN 110
>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)
Length = 149
Score = 40.7 bits (91), Expect = 2e-04
Identities = 15/18 (83%), Positives = 18/18 (100%)
Frame = +3
Query: 258 VPEMVGSIVGIYNGKTFN 311
VPEM+GSI+G+YNGKTFN
Sbjct: 90 VPEMIGSIIGVYNGKTFN 107
Score = 39.1 bits (87), Expect = 6e-04
Identities = 26/55 (47%), Positives = 29/55 (52%)
Frame = +1
Query: 19 KKAYFQGSSLTGGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
KK F+ S G VDLD LLDM E L++ GL RKPMAL KLR
Sbjct: 12 KKRTFKKFSFRG-VDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLR 65
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2
Query: 188 AKKEAPSNEKPEIVKTHLRNMII 256
AK EAP+ EKP V+THLRNMII
Sbjct: 67 AKMEAPAGEKPASVRTHLRNMII 89
>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
similar to SP|Q08112 40S ribosomal protein S15
{Arabidopsis thaliana}
Length = 70
Score = 39.1 bits (87), Expect = 6e-04
Identities = 25/55 (45%), Positives = 28/55 (50%)
Frame = +1
Query: 19 KKAYFQGSSLTGGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLR 183
KK F+ S G VDLD LLDM E L++ G RKPMAL KLR
Sbjct: 12 KKRIFKKFSFRG-VDLDALLDMSTEDLVKHFSSRIRRRFSRGFTRKPMALIKKLR 65
>At5g63070.1 68418.m07914 40S ribosomal protein S15, putative
Length = 160
Score = 36.3 bits (80), Expect = 0.004
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +3
Query: 258 VPEMVGSIVGIYNGKTFN 311
VPEM+GS+VG++NGK FN
Sbjct: 97 VPEMIGSVVGVHNGKKFN 114
Score = 35.9 bits (79), Expect = 0.006
Identities = 18/25 (72%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Frame = +2
Query: 188 AKKEAPSNEK--PEIVKTHLRNMII 256
AKKEA K PE+VKTHLRNMII
Sbjct: 72 AKKEASDENKMKPEVVKTHLRNMII 96
Score = 32.3 bits (70), Expect = 0.070
Identities = 21/62 (33%), Positives = 31/62 (50%)
Frame = +1
Query: 19 KKAYFQGSSLTGGVDLDQLLDMPNEQLMELMHXXXXXXXXXGLKRKPMALGGKLRPRQER 198
KK F+ S G ++D LL M N L +L + GLK++P+ L KLR ++
Sbjct: 17 KKRTFKKFSFRG-FNVDALLKMSNVDLAKLFNARVRRRFYRGLKKQPLILIKKLRRAKKE 75
Query: 199 GS 204
S
Sbjct: 76 AS 77
>At1g07280.1 68414.m00774 expressed protein
Length = 552
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -1
Query: 252 IMFLK*VFTISGFSLEGASFLAGTQLPPQCHWFTFKTTSE 133
+M L FT+ +S+E S LA PP F+F+TT+E
Sbjct: 273 VMILLANFTV--YSIESNSALAAAVSPPTTLSFSFETTAE 310
>At5g25970.1 68418.m03089 hypothetical protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 436
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 167 WGGSCVPAKKEAPSNEKPEI 226
WG S +P +KE P N P+I
Sbjct: 150 WGASFMPRRKEYPFNRVPKI 169
>At4g02130.2 68417.m00285 glycosyl transferase family 8 protein low
similarity to lgtC of Neisseria sp., GenBank accession
number U14554, U65788; contains Pfam glycosyl
transferase family 8 domain PF01501
Length = 346
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 8 ETLKKKRIFREVHLPGELISISSLICPMSNSWN 106
E +++RI+ LP L+ S + P+S+ WN
Sbjct: 256 EIQRRERIYELGSLPPFLLVFSGHVAPISHRWN 288
>At4g02130.1 68417.m00284 glycosyl transferase family 8 protein low
similarity to lgtC of Neisseria sp., GenBank accession
number U14554, U65788; contains Pfam glycosyl
transferase family 8 domain PF01501
Length = 346
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 8 ETLKKKRIFREVHLPGELISISSLICPMSNSWN 106
E +++RI+ LP L+ S + P+S+ WN
Sbjct: 256 EIQRRERIYELGSLPPFLLVFSGHVAPISHRWN 288
>At1g05430.1 68414.m00551 expressed protein
Length = 269
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +2
Query: 125 AGGSLVVLNVNQWHWGGS--CVPAKKEAPSNEKPEIVKTHLRNMIIRSRDGRFNCWDLQR 298
A G V W+W S V + S + + K L N+++RS G W L
Sbjct: 71 AAGVAASTFVVAWNWSSSKYAVSSLDHILSQDATRMQK-ELVNVLVRSNRGEAWRWQLMS 129
Query: 299 KNF*P 313
K+F P
Sbjct: 130 KHFYP 134
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 252 SFVPEMVGSIVGIYNGKT 305
+ +PE V S V IYNGKT
Sbjct: 164 TILPEYVDSAVRIYNGKT 181
>At4g14990.1 68417.m02303 expressed protein
Length = 787
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 188 AKKEAPSNEKPEIVKTHLRNMIIRSRD 268
AKK + S KP++ +HL++ RSR+
Sbjct: 412 AKKSSGSRTKPQLYPSHLKDHQSRSRN 438
>At4g34030.1 68417.m04829 methylcrotonyl-CoA carboxylase beta chain,
mitochondrial / 3-methylcrotonyl-CoA carboxylase 2
(MCCB) identical to SP|Q9LDD8 Methylcrotonyl-CoA
carboxylase beta chain, mitochondrial precursor (EC
6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 2) (MCCase
beta subunit) (3-methylcrotonyl-CoA:carbon dioxide
ligase beta subunit) {Arabidopsis thaliana}; contains
Pfam profile: PF01039 carboxyl transferase domain
Length = 587
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 283 TIEPTISGTNDHVSQVSLHDLWLLIGRSL 197
T+ T+SG +D+ +Q LH L IGR++
Sbjct: 282 TVHCTVSGVSDYFAQDELHG--LAIGRNI 308
>At1g19300.1 68414.m02400 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 Glycosyl transferase
family 8
Length = 351
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 17 KKKRIFREVHLPGELISISSLICPMSNSWN 106
K+ RI+ LP L+ + LI P+++ WN
Sbjct: 260 KRMRIYELGSLPPFLLVFAGLIKPVNHRWN 289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,287,013
Number of Sequences: 28952
Number of extensions: 142591
Number of successful extensions: 360
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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