Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0624
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0737 - 13529180-13529543,13530661-13531178 31 0.93
11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793 29 2.8
07_03_0091 + 13312904-13313647 29 3.7
10_08_0100 + 14788426-14789097 28 5.0
01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735 28 5.0
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 5.0
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 28 6.5
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 28 6.5
09_02_0081 - 4041364-4041555,4041830-4041911,4042192-4042443,404... 27 8.7
08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983 27 8.7
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 27 8.7
07_03_0089 - 13300902-13301645 27 8.7
02_01_0070 + 495570-495647,495692-496075 27 8.7
01_02_0007 + 10132380-10133201 27 8.7
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 30.7 bits (66), Expect = 0.93
Identities = 25/65 (38%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Frame = +1
Query: 337 PLPGRK---ENPLPRE-SARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTC 504
PL GR+ +P PR R P PR PS CQ A PSR ALPS
Sbjct: 70 PLQGRRPAESSPQPRPPQVRRPQPPRRHRSTAPSSSSCQFQ----AAAPSRPPSALPSPT 125
Query: 505 PSRQT 519
S T
Sbjct: 126 ASSST 130
>11_04_0411 - 17367432-17368247,17368317-17368658,17372221-17372793
Length = 576
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +1
Query: 313 SLPRRKAHPLPGRKENPLPRESARSP---TLPRCQTCPLPS*RDC 438
S R++ P P +K P P + P R CPLP+ R C
Sbjct: 528 STARKRTRP-PSKKPKPDPEATTSEPWGLRFARANNCPLPAPRSC 571
>07_03_0091 + 13312904-13313647
Length = 247
Score = 28.7 bits (61), Expect = 3.7
Identities = 19/69 (27%), Positives = 24/69 (34%)
Frame = +1
Query: 319 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 498
P KA P P K P P S P+ + P PS + + P K P
Sbjct: 166 PSPKADPKPNPKPKPQPEPSPNPKPEPKPEPKPEPSPNPKPNPNPKPEPQPDPKPEPKPQ 225
Query: 499 TCPSRQTRP 525
PS+ P
Sbjct: 226 PEPSQPKLP 234
>10_08_0100 + 14788426-14789097
Length = 223
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 367 PRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTC 504
PR A SP PR C DCQ + R+A P+R + C
Sbjct: 178 PRRPAPSPASPRLPMCSYTCTVDCQTRNVRSA--PTRPSSSTDGGC 221
>01_06_0691 - 31268729-31269010,31269596-31270051,31270560-31271735
Length = 637
Score = 28.3 bits (60), Expect = 5.0
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 277 PQNRNCR*ESSCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS-*RDCQGTSS 453
P N+N + + R + + G P P++ ARSP L R +P ++ + +S
Sbjct: 210 PSNKNMLVADAAA--RSSSLKVAGEGPKPKPKQRARSPPLRR----DVPELFKEAKSSSK 263
Query: 454 RTATLPSRKEGALPSTCPSR 513
R +T P R++ + P PSR
Sbjct: 264 RFSTPPPRRKPSSP-PAPSR 282
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 319 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPL 420
PRR A P GR +P P S RSP PR P+
Sbjct: 229 PRRSASPPNGRNRSPTPNAS-RSPA-PRDSRSPM 260
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 390 NPTPLSNMSLTQLKR---LSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPSRYM 539
N LSN L+Q++R L +Y Y + + L QY+ TDPS S ++
Sbjct: 675 NLMSLSNYMLSQMQRMEFLQKYPLVYTSLQLIQPCHLLQYIVHLTDPSRSMFI 727
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 337 PLPGRKENPLPRESARSPTLPRCQTCPLP 423
PLP R+ PLP SA P + PLP
Sbjct: 16 PLPPRRRLPLPSSSASFPRAGHHRRLPLP 44
>09_02_0081 -
4041364-4041555,4041830-4041911,4042192-4042443,
4042529-4044001,4044222-4044733,4044824-4045021
Length = 902
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +1
Query: 343 PGRKENPLPRESARSPTLP--RCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 516
P E P PR R PT P Q PLP+ + Q + T P+++ P PS Q
Sbjct: 497 PSPPEPPSPRHPPRQPTPPPSPSQQPPLPTPQPVQA----SPTSPTKQHA--PPAPPSVQ 550
Query: 517 TRP 525
T P
Sbjct: 551 TSP 553
>08_02_1403 + 26811020-26811146,26813351-26813609,26814932-26814983
Length = 145
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +1
Query: 385 SPTLPRCQTCPLPS*RDCQGTSSR---TATLPSRKEGALPSTCPSRQTRPRQG 534
S + R CP+PS RD +G S TA + + G P PS P QG
Sbjct: 12 STHIRRRAACPVPSDRDDEGFSQPLIITARVGYPQSGPYPYPPPSGAVYPPQG 64
>07_03_0860 +
22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 472 SRKEGALPSTCPSRQTRPRQGICAXTLPP 558
+R GA P++ PS+ T G A TLPP
Sbjct: 505 ARAAGAPPASLPSQLTADPSGARAPTLPP 533
>07_03_0089 - 13300902-13301645
Length = 247
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/69 (27%), Positives = 23/69 (33%)
Frame = +1
Query: 319 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 498
P KA P P K P P S P+ + P PS + + P K P
Sbjct: 166 PSPKADPKPNPKPKPQPEPSPNPKPEPKPEPKPEPSPNPKPNPNPKPEPQPDPKPEPKPQ 225
Query: 499 TCPSRQTRP 525
PS P
Sbjct: 226 PEPSLPKPP 234
>02_01_0070 + 495570-495647,495692-496075
Length = 153
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/54 (35%), Positives = 21/54 (38%)
Frame = +1
Query: 367 PRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPR 528
P S R P R T PL + TSS T GA ST +R T R
Sbjct: 26 PLSSKRQPWYSRKSTAPLLLAKHSSRTSSSTVNGGGISSGAADSTTLARSTAAR 79
>01_02_0007 + 10132380-10133201
Length = 273
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 319 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLP 423
PR + PLP NP P+ + P+ Q PLP
Sbjct: 54 PRPQPQPLPQPNPNPQPQPLPQPQPQPQPQPQPLP 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,087,118
Number of Sequences: 37544
Number of extensions: 237695
Number of successful extensions: 863
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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