Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0624
         (602 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       29   0.088
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    28   0.20 
U43500-1|AAA93303.1|  280|Anopheles gambiae a-CD36 protein.            25   2.5  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   5.8  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    23   7.6  

>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 29.5 bits (63), Expect = 0.088
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
 Frame = -2

Query: 553 VRXWHIYLDGDGSVDW---DMYWVRHLLFDWVGL------RYVNWYLDNLFNWVRDMFDN 401
           V  W +Y  G+G  D    D     HL++ + G+      R ++ YLD   NW R     
Sbjct: 37  VGTWAVYRPGNGRYDIEHIDPSLCTHLMYGFFGINEDATVRIIDPYLDLEENWGRGHIKR 96

Query: 400 GVGLGNV 380
            VGL NV
Sbjct: 97  FVGLKNV 103


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 28.3 bits (60), Expect = 0.20
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +1

Query: 337 PLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 516
           P   R E  + R +  SP L +  TCP+P    C    SR +++  R   A  ++C +R 
Sbjct: 37  PRTRRSEAVMTRSTPSSPRLAQASTCPVP----CSSIWSRPSSM--RCAPARTASCSTRS 90

Query: 517 T 519
           +
Sbjct: 91  S 91


>U43500-1|AAA93303.1|  280|Anopheles gambiae a-CD36 protein.
          Length = 280

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 541 HIYLDGDGSVDWDMYWVRHLLFDWV 467
           +I+L  DGS+ W    VR LLF+ V
Sbjct: 78  NIFLKTDGSLLWKNKPVRELLFEGV 102


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 381 TFPNPTPLSNMSLTQLKRLSRYQFTYRNPTQS 476
           TF   TP+   + T  K    YQ+T R P  S
Sbjct: 798 TFTKLTPIWRCATTVRKGRKLYQYTIRLPINS 829


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 419 KGHV*QRGRVGERALSRGRGFSFLPG 342
           KG    RG+VGER     +G    PG
Sbjct: 322 KGQAGDRGQVGERGHKGEKGLPGQPG 347


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 431,399
Number of Sequences: 2352
Number of extensions: 7437
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58450473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)