Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0624
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    32   0.36 
Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 27/88 (30%), Positives = 39/88 (44%)
 Frame = +1

Query: 307 SCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 486
           S S PRR+    P ++    PR + RSP+ PR +       R  +    R+ + P R+  
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRR-------RISRSPVRRSRSPPRRQVS 140

Query: 487 ALPSTCPSRQTRPRQGICAXTLPPLKRK 570
              S  P RQ R R      + PP KR+
Sbjct: 141 RSRSPPPRRQQRSR------SPPPAKRR 162


>Z95559-1|CAB08999.1|  289|Caenorhabditis elegans Hypothetical
           protein Y41E3.2 protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = +1

Query: 352 KENPLP-RESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPR 528
           +E PL    +ARS    +C  C LP  +  QGT  +    P  K GA P   P    RP 
Sbjct: 68  RELPLSANRTARSTYNEQCAGCCLPGPQGPQGTPGKPGK-PG-KPGA-PGQ-PGTPGRPP 123

Query: 529 QGICAXTLPP 558
           Q  C  T PP
Sbjct: 124 QQPCEPTTPP 133


>Z82282-3|CAB05275.1|  638|Caenorhabditis elegans Hypothetical
           protein T07G12.3 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 496 WVRHLLFDWV-GLRYVNWYLDNLFNWVRDMFDN 401
           W+  +  DW+ G   V+ YL N F    +MFDN
Sbjct: 357 WLAWVAHDWIDGAARVDEYLVNYFKKHNNMFDN 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,462,996
Number of Sequences: 27780
Number of extensions: 175175
Number of successful extensions: 644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)