Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0621
         (705 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1D569 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_A5IFG5 Cluster: Transposase; n=1; Legionella pneumophil...    34   3.9  
UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1; ...    34   3.9  
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    33   6.8  
UniRef50_Q5CRQ0 Cluster: Large low complexity protein with predi...    33   6.8  

>UniRef50_Q1D569 Cluster: Putative uncharacterized protein; n=1;
           Myxococcus xanthus DK 1622|Rep: Putative uncharacterized
           protein - Myxococcus xanthus (strain DK 1622)
          Length = 274

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 20/44 (45%), Positives = 24/44 (54%)
 Frame = -1

Query: 471 RRLLFFCFLMKTPNCEFEARFGDRADVSKSLDGHDLITLQLLWR 340
           RRLL    L+  P    +  +GD  DVS SLDG   IT+Q  WR
Sbjct: 37  RRLLPLALLLSAPAAAQDYGYGDE-DVSTSLDGVGRITIQGGWR 79


>UniRef50_A5IFG5 Cluster: Transposase; n=1; Legionella pneumophila
           str. Corby|Rep: Transposase - Legionella pneumophila
           (strain Corby)
          Length = 328

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = -2

Query: 437 PQTVNSRHGSVIVLTSANHWT-DTI*LHCNYCGAVNKKVKQKHRQFQLLRNTASHRRPF* 261
           P  +  R   +       HW  DTI    N    +   V++K R   L++NT+ H R   
Sbjct: 154 PYLITQRPEEIDSRERFGHWEGDTIEFKGNKSEVITTLVERKTRMVYLIKNTSKHSRGVM 213

Query: 260 EQLKKCFRK 234
           E++ K F K
Sbjct: 214 EKINKKFEK 222


>UniRef50_Q8MTQ1 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 85

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 15  IAIVVSDYRRPWTSAMPGAEPS-RCLPPGRCLMGCIVADDT 134
           I +V  ++R  WTS +PGA+P  RCL   R   G  V  DT
Sbjct: 38  IYLVDDNHRHSWTSTIPGAQPDHRCLVNLRHTYGRFVIHDT 78


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -3

Query: 79   LGSAPGIAEVHGRR 38
            LGSAPGIAEVHGRR
Sbjct: 973  LGSAPGIAEVHGRR 986


>UniRef50_Q5CRQ0 Cluster: Large low complexity protein with predicted
            coiled coil regions; n=2; Cryptosporidium|Rep: Large low
            complexity protein with predicted coiled coil regions -
            Cryptosporidium parvum Iowa II
          Length = 2511

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 398  LTSANHWTDTI*LHCNYCGAVNKKVKQKHRQFQLLRNTASHRRPF*EQLKKCFRKNS 228
            L S N++      H +Y G  + K+++KHR+     N  S  +   +  KKC R  S
Sbjct: 1508 LNSCNNYPKHYHKHYHYSGLKSSKLEKKHRKSSCKHNHMSKHKDKYKHYKKCHRSKS 1564


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,778,012
Number of Sequences: 1657284
Number of extensions: 12446680
Number of successful extensions: 26505
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 25462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26488
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)