Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0621
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    28   1.1  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    27   3.5  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.0  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    25   8.0  

>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 172  NNYLITILNT--RIEPQRRYNEFLRKHFFNCS*NGLR*LAVLRNNW 303
            N  LI I+N   R+        + RK  FNC    L  + ++RNNW
Sbjct: 949  NQPLIAIINQYGRVGDYNESMVYRRKIPFNCELKNLSIIDIIRNNW 994


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 172 NNYLITILN--TRIEPQRRYNEFLRKHFFNCS*NGLR*LAVLRNNWNCRCF 318
           N+Y   +++    ++P R Y  FL K+F NC     R   ++R  WN + F
Sbjct: 186 NDYFNVVIHMLAHVKPFRNY--FLLKNFDNCPQLVQRLAILIRKLWNHKAF 234


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
 Frame = -2

Query: 677 CFFKRVTFFKLLIVNCSGAYLQESKCI----FINDKINAL-SIFSIIYCPL 540
           CF  R++ + LL ++ +  Y+Q + C+    F    INAL  +F+II+ PL
Sbjct: 170 CFKTRLSNWMLLPISANPWYIQVAFCVTSGFFSYLFINALYYLFAIIFVPL 220


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 299 LLRNTASHRRPF*EQLKKCFRKNSLY 222
           L++N  S+R+PF  + +   +KNS Y
Sbjct: 921 LIKNDTSNRKPFGAENQSKLKKNSFY 946


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 449 KQKNNNLRVNTKTCSLTSNG*LKGMAH 529
           K+  NN++++    SL +NG ++GMA+
Sbjct: 654 KENVNNIKISQPRNSLQTNGYIEGMAN 680


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,377
Number of Sequences: 5004
Number of extensions: 54739
Number of successful extensions: 136
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)