Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0621
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6542| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08)                  28   6.4  

>SB_6542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +2

Query: 41  SPMDFSNARGRAKPLPTARPLPNGLYSGR 127
           S M   +A+GRAKPLP   P PN +  GR
Sbjct: 157 SKMGLPSAKGRAKPLP---PFPNFINVGR 182


>SB_42790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 552

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 242 FRKNSLYLLCGSILVFKIVIK*LLIT*WLRYILHIGCIIC 123
           F  N  YL+C ++LV  ++I  L +  WL  +  +  I C
Sbjct: 272 FGLNECYLICAALLVPLVLIHQLTVLAWLSMLAVLSLITC 311


>SB_45286| Best HMM Match : GRIP (HMM E-Value=3.6e-08)
          Length = 800

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 20  HCRE*LPSPMDFSNARGRAKPLPTAR 97
           +C++ +PSP+ FS+AR R  P   +R
Sbjct: 586 YCKQTVPSPLYFSSARNRGLPRNPSR 611


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,427,650
Number of Sequences: 59808
Number of extensions: 398843
Number of successful extensions: 816
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)