Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0621
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b prote...    29   3.2  
Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U40797-5|AAB37548.1|  402|Caenorhabditis elegans Saposin-like pr...    28   7.5  

>AF040653-8|AAB95031.1|  532|Caenorhabditis elegans F-box b protein
           protein 50 protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = -3

Query: 385 IIGRTRFDYTATIV-AL-------LTKRSNKNIDNSNYYVTRQVIGDHFRNS*RNAFVKI 230
           I   +R   TATI+ AL       L K  N+ +D+S   V RQ++  +FR+    A + +
Sbjct: 123 ISSNSRMQNTATIIDALPLVDQLDLLKYQNQRLDSSELLVLRQILVQNFRDLIITANIPL 182

Query: 229 HYTF 218
           +Y F
Sbjct: 183 NYLF 186


>Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical
           protein F25B3.3 protein.
          Length = 654

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = -2

Query: 647 LLIVNCSGAYLQESKCIFINDKINALS 567
           L+ +NCSGA  +++KCI  +DK+  LS
Sbjct: 312 LVAINCSGANFEKTKCI-SSDKLVKLS 337


>U40797-5|AAB37548.1|  402|Caenorhabditis elegans Saposin-like
           protein family protein8 protein.
          Length = 402

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/63 (20%), Positives = 30/63 (47%)
 Frame = +2

Query: 215 REGIMNFYESISLTVPKMVSDDLPCYVIIGIVDVFV*PFC*QRHNSCSVIKSCPSNDLLT 394
           R+ + +  ++ +  + K+V D+   Y +   +  FV     + H +C++  S    DL+T
Sbjct: 125 RQEVCDECQASTAQIGKLVGDEFTTYAVKSTLQRFVCKSAGKAHKACNIFVSSVIPDLMT 184

Query: 395 SAR 403
             +
Sbjct: 185 EMK 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,535,066
Number of Sequences: 27780
Number of extensions: 311136
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)