Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0621
         (705 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    28   0.099
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    27   0.17 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.6  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 27.9 bits (59), Expect = 0.099
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 365 KSCPSNDLLTSARSPNRASNSQFGVFIRKQKNNNLRVNTK 484
           +S P+NDLLT+ +  N    +Q   F+ + K +++ V+TK
Sbjct: 403 QSVPANDLLTTEKDNNEIVTAQ---FLNQLKKSSVLVHTK 439


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -3

Query: 340 LLTKRSNKNIDNSNYYVTRQVIGDHFRNS*RNAFVKIHYTFSAV 209
           +++  SNK I N+N Y        ++ N+  N + K++Y  + +
Sbjct: 81  IISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINYI 124


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 697  PAKIKILVFSKELLFLNYL 641
            PA IK++V S + LF+++L
Sbjct: 1217 PADIKVVVSSPQALFISWL 1235


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 697  PAKIKILVFSKELLFLNYL 641
            PA IK++V S + LF+++L
Sbjct: 1213 PADIKVVVSSPQALFISWL 1231


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 564 FFYNLLSALGLKWAIPFN 511
           F  +L   L ++W IPFN
Sbjct: 282 FILHLFCLLDVQWRIPFN 299


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 408  GDRADVSKSLDGHDLI 361
            GD  +V+KSL  HD I
Sbjct: 1636 GDSLNVAKSLQDHDCI 1651


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 56   SNARGRAKPLPTARPLPNGLYSG 124
            SN+RG A+     R +  G+Y G
Sbjct: 1254 SNSRGAAQMSKVPRDVSEGIYDG 1276


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 371 CPSNDLLTSARSPNRASNSQFGV 439
           CP N  LTS R   + S  QF V
Sbjct: 312 CPPNLRLTSERGYEQESKVQFVV 334


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 371 CPSNDLLTSARSPNRASNSQFGV 439
           CP N  LTS R   + S  QF V
Sbjct: 402 CPPNLRLTSERGYEQESKVQFVV 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,490
Number of Sequences: 438
Number of extensions: 4024
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)