Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0621
         (705 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32240.1 68414.m03966 myb family transcription factor (KAN2) ...    29   4.0  
At4g34410.1 68417.m04887 AP2 domain-containing transcription fac...    28   5.2  
At5g02080.1 68418.m00129 DNA/panthothenate metabolism flavoprote...    28   6.9  
At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [H...    27   9.2  
At1g12350.1 68414.m01427 DNA/panthothenate metabolism flavoprote...    27   9.2  

>At1g32240.1 68414.m03966 myb family transcription factor (KAN2)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA GARP-like putative
           transcription factor KANADI2 (KAN2)  GI:15723594
          Length = 388

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +2

Query: 338 QRHNSCSVIKSCPSNDLLTSARSPNRASNSQFGVFIRKQKNNNLR 472
           Q+H+   ++ +C S+++LTS + P +        F+    N +LR
Sbjct: 84  QQHHHPQLLPNCNSSNILTSFQFPTQQQQQHLQGFLAHDLNTHLR 128


>At4g34410.1 68417.m04887 AP2 domain-containing transcription
           factor, putative ethylene-responsive element binding
           protein homolog, Stylosanthes hamata, U91857
          Length = 268

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = -2

Query: 362 LHCNYCGAVNKKVKQKHRQFQLLRNTASHRR 270
           L CNY  A N+++++ H+Q + + ++++ RR
Sbjct: 81  LGCNYFFAPNQRIEKNHQQEEEITSSSNRRR 111


>At5g02080.1 68418.m00129 DNA/panthothenate metabolism flavoprotein
           family protein contains Pfam domain PF04127: DNA /
           pantothenate metabolism flavoprotein
          Length = 270

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 280 LAVLRNNWNCRCFCLTFLL 336
           L+VLR+NW  + FC++F L
Sbjct: 174 LSVLRSNWAPKAFCISFKL 192


>At1g48790.1 68414.m05460 mov34 family protein similar to AMSH [Homo
           sapiens] GI:4098124; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 507

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
 Frame = +2

Query: 224 IMNFYESISLTVPKMVSDDLPCYVIIGIVDVFV*PFC*Q-RHNSCSVIKSCPSNDLLTSA 400
           +++F E  S+    ++    P  V+  + D+ V   C + R   C +  S P   L + +
Sbjct: 271 MISFEEPESVNENNLIRQPSPPPVLAEVQDL-VPALCPEVREPECMIENSLPDESLRSES 329

Query: 401 RSPNRASNSQFGVFIRKQKNNNLRVNTKTCSL 496
                 + S    F+R  K+N  + N +TC +
Sbjct: 330 PLELHIATSMMDTFMRLAKSNT-KKNLETCGI 360


>At1g12350.1 68414.m01427 DNA/panthothenate metabolism flavoprotein
           family protein contains Pfam domain PF04127: DNA /
           pantothenate metabolism flavoprotein
          Length = 317

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 280 LAVLRNNWNCRCFCLTFLL 336
           L++LR+NW  + FC++F L
Sbjct: 221 LSILRSNWAPKAFCISFKL 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,179,477
Number of Sequences: 28952
Number of extensions: 270665
Number of successful extensions: 497
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)