Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0620
         (488 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    44   0.002
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    43   0.003
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    33   2.6  
UniRef50_Q5QJP1 Cluster: Putative uncharacterized protein; n=2; ...    33   4.5  
UniRef50_Q9HBQ9 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_Q2WEJ4 Cluster: Rco-1 homologue; n=1; Sordaria macrospo...    33   4.5  
UniRef50_P78706 Cluster: Transcriptional repressor rco-1; n=4; A...    33   4.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 43.6 bits (98), Expect = 0.002
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = -1

Query: 419 RWVNELTAHLVLSGYWSP 366
           RWV+ELTAHLVLSGYWSP
Sbjct: 158 RWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 43.2 bits (97), Expect = 0.003
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = -1

Query: 242 AEWWYPPARTHKRSYHQ*LRQL*FCG 165
           AEWWY PARTHKRSYH+   Q  +CG
Sbjct: 569 AEWWYLPARTHKRSYHR--YQCSYCG 592


>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 447 RGGARYPIRPIVSR 488
           RGGARYPIRPIVSR
Sbjct: 260 RGGARYPIRPIVSR 273


>UniRef50_Q5QJP1 Cluster: Putative uncharacterized protein; n=2;
            Bacteria|Rep: Putative uncharacterized protein -
            Salmonella typhimurium
          Length = 1274

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +2

Query: 26   SGAFVLSDVPMFKSQAGTNFSNEIHTQQMFTIDFHGEGITSCNKNETRKIIIGVITGGRT 205
            S +FVL DV +  ++  T  +   + Q ++++  H   IT C  N    +       G T
Sbjct: 947  SMSFVLEDVSVILNKENTETTEISYDQNLYSLLAHHNHITPCWNNVISLLSEDASIAGDT 1006

Query: 206  SCESARVGTTTLP 244
             CE   +  + LP
Sbjct: 1007 FCEWLNINYSLLP 1019


>UniRef50_Q9HBQ9 Cluster: Putative uncharacterized protein; n=1;
           Homo sapiens|Rep: Putative uncharacterized protein -
           Homo sapiens (Human)
          Length = 353

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +2

Query: 428 KKKKKNSRGGPVPNS 472
           KKKKKNSRGGPVP +
Sbjct: 46  KKKKKNSRGGPVPGN 60


>UniRef50_Q2WEJ4 Cluster: Rco-1 homologue; n=1; Sordaria
           macrospora|Rep: Rco-1 homologue - Sordaria macrospora
          Length = 150

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 98  HTQQMFTIDFHGEGITSCNKNETRKI-IIGVITGGRTSCESARVGTTTLPISAMKQ 262
           H Q ++++DF  +G T  + +  R + +  + TG  TS  S   G TT+ IS  KQ
Sbjct: 88  HEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVLSIEDGVTTVAISPDKQ 143


>UniRef50_P78706 Cluster: Transcriptional repressor rco-1; n=4;
           Ascomycota|Rep: Transcriptional repressor rco-1 -
           Neurospora crassa
          Length = 604

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 98  HTQQMFTIDFHGEGITSCNKNETRKI-IIGVITGGRTSCESARVGTTTLPISAMKQ 262
           H Q ++++DF  +G T  + +  R + +  + TG  TS  S   G TT+ IS  KQ
Sbjct: 385 HEQDIYSLDFSRDGRTIASGSGDRTVRLWDIETGQNTSVLSIEDGVTTVAISPDKQ 440


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 547,494,337
Number of Sequences: 1657284
Number of extensions: 11308132
Number of successful extensions: 22131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 21587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22124
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)