Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0620
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   2.7  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   4.6  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   6.1  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   8.1  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 175 NFAGFIFITRCYSFTVEINREHLLSMYFIRKIGTRLRFEHRYIAQHECTGRL 20
           NF  F  I    S    +N  H L      KIG+ ++ +H Y+  ++ + RL
Sbjct: 536 NFVTFPLIITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRL 587


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 289 PHPSNRNALLLHGRNRQSGGTHP 221
           PHP N   +LL G N Q+  + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 405 AHSPPGVKWLLEPIDIHNVNAPPTLR 328
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 21  RRPVHSC*AMYRCSNLRRVPIFLMKYI 101
           R P+  C  +++   LRRVP +  +YI
Sbjct: 7   RDPLKDCEYVFKGDGLRRVPPYYYEYI 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,742
Number of Sequences: 5004
Number of extensions: 44656
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)