Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0620
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    31   0.50 
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948...    29   2.6  
08_02_1461 - 27299891-27301870                                         28   4.6  
07_03_1609 + 28128275-28128380,28128941-28129128,28129238-281294...    27   6.1  
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731...    27   6.1  
08_02_1101 - 24308433-24308978,24309195-24309364,24309443-243095...    27   8.1  

>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 71  AGTNFSNEIHTQQMFTIDFHGEGITSC-NKNETRKIIIGVITGGRTSCESARVGTTTLPI 247
           +GT+   +    ++  +D  G GIT+C  +NE +K    ++ G      + RV   T  +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 248 SAM 256
           +A+
Sbjct: 89  NAV 91


>01_03_0303 +
           14792842-14792949,14793659-14793760,14794657-14794800,
           14794906-14794986,14795078-14795147,14795267-14795337,
           14795427-14795594,14796030-14796074,14796449-14796511,
           14796594-14796869,14797858-14797971,14798099-14798225,
           14798315-14798484,14798743-14798841,14799577-14799630,
           14801487-14801522,14801741-14801844,14801952-14802186,
           14802377-14802609,14802846-14803346,14803422-14803716,
           14805796-14805881,14806952-14807064,14807303-14807385,
           14808014-14808866,14809215-14809364,14809963-14811146
          Length = 1854

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 145 CYSFTVEINREHLLSMYFIRKIGTRLRFEHRYIAQ 41
           CYS T+ +N+    +M +++  G  LR EH ++ +
Sbjct: 567 CYSSTIYVNKNIADTMAYLQGEGRLLRAEHNHLCE 601


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 286 HPSNRNALLLHGRNRQSGGTHPRGLTRGPTTS 191
           H ++    LL GR R  GG H RGL   P  S
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVS 313


>07_03_1609 +
           28128275-28128380,28128941-28129128,28129238-28129415,
           28130753-28130973
          Length = 230

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 301 LQRLPHPSNRNALLLHGRNRQSGGTHPRGLTRGPTTS-NYANY 176
           + R P PS R+A+L    NR   G HP+ + R      N+  Y
Sbjct: 7   MARGPQPSPRHAILAQLDNRAMLGLHPQHVLRSHAQEVNFVRY 49


>05_07_0098 +
           27672298-27672561,27672617-27672705,27673111-27673159,
           27673217-27673304,27673891-27674020,27674790-27675366
          Length = 398

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 294 RCNYT*DLRTYISRWVAHLRCECL 365
           RC  T  LR    RW  HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324


>08_02_1101 -
           24308433-24308978,24309195-24309364,24309443-24309542,
           24310337-24310500,24310960-24310996,24311222-24311262,
           24313877-24314093
          Length = 424

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -2

Query: 289 PHPSNRNALLLHGRNRQSGGTHPRGLTRGPTTSNYANYNFAGF 161
           P PS+  +       R S G H  G   G   + Y+NYN  GF
Sbjct: 257 PPPSSHGSASRSAYGRDSRG-HSSGNDYGGLANAYSNYNSGGF 298


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,731
Number of Sequences: 37544
Number of extensions: 335728
Number of successful extensions: 662
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)