Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0620
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)         29   2.1  
SB_45154| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)             28   4.7  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               28   4.7  

>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
          Length = 490

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -2

Query: 205 GPTTSNYANYNFAGFIFITRCYSFTVEINREHLLSMYFIRKIGT--RLRFEHRYIAQHEC 32
           GP TS Y N N  GF+ +       V + RE +L      + GT  RL+   R +    C
Sbjct: 262 GPKTSRYYNVNDNGFLLLDH-----VRVPREQMLMGLAQSRGGTNSRLQVTTRQVVSRAC 316

Query: 31  TG 26
           +G
Sbjct: 317 SG 318


>SB_45154| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
          Length = 486

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 214 VRAGGYHHSAYFCHEAVMRFGLKGG 288
           ++ GGY+HS YF H     FG+K G
Sbjct: 241 IKVGGYNHSKYFVH-----FGIKVG 260


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 319 LRSHV*LQRLPHPSNRNALLLHGRNRQS 236
           LR    +QR P P+ RN++ LHG   Q+
Sbjct: 24  LRQQNQVQRRPEPTPRNSIFLHGLRAQT 51


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,090,449
Number of Sequences: 59808
Number of extensions: 364943
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)