Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0620
(488 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e... 30 1.0
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 29 1.8
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 29 1.8
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 27 9.7
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 27 9.7
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 27 9.7
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 27 9.7
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 27 9.7
AF067623-1|AAC17553.2| 640|Caenorhabditis elegans Hypothetical ... 27 9.7
>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
mutant phenotypeprotein 1 protein.
Length = 4177
Score = 29.9 bits (64), Expect = 1.0
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = -2
Query: 277 NRNALLLHGRNRQSGGTHPRG----LTRGPTTSNYANYNFAGFIFITRCYSFTVEINREH 110
NR ++ G Q G R +TR NYA + A +T + IN EH
Sbjct: 3847 NRFYIIFQGEEGQDAGGLLREWFSVITREIFNPNYALFITAPGDMVTYMINKASYINPEH 3906
Query: 109 LLSMYFIRKIGTRLRFEHRYI 47
L F+ ++ + FEH+Y+
Sbjct: 3907 LDYFKFVGRLIAKSVFEHKYL 3927
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = -2
Query: 478 IGRIGYRAPPRVFFFFF---YCLDG 413
IG G+ APP VF FFF YC G
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYCNSG 372
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = -2
Query: 478 IGRIGYRAPPRVFFFFF---YCLDG 413
IG G+ APP VF FFF YC G
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYCNSG 370
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 208 RGPTTSNYANYNFAGFIFITRCYSFTVEINREHLLSMYFI-RKIGT 74
+G +SNY NY F + + Y VEI +H+L Y I ++GT
Sbjct: 5698 KGTVSSNYDNYVFDIW---KQYYPQPVEIKHDHVLDHYDIHEELGT 5740
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 208 RGPTTSNYANYNFAGFIFITRCYSFTVEINREHLLSMYFI-RKIGT 74
+G +SNY NY F + + Y VEI +H+L Y I ++GT
Sbjct: 6227 KGTVSSNYDNYVFDIW---KQYYPQPVEIKHDHVLDHYDIHEELGT 6269
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 208 RGPTTSNYANYNFAGFIFITRCYSFTVEINREHLLSMYFI-RKIGT 74
+G +SNY NY F + + Y VEI +H+L Y I ++GT
Sbjct: 5908 KGTVSSNYDNYVFDIW---KQYYPQPVEIKHDHVLDHYDIHEELGT 5950
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 208 RGPTTSNYANYNFAGFIFITRCYSFTVEINREHLLSMYFI-RKIGT 74
+G +SNY NY F + + Y VEI +H+L Y I ++GT
Sbjct: 5698 KGTVSSNYDNYVFDIW---KQYYPQPVEIKHDHVLDHYDIHEELGT 5740
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 208 RGPTTSNYANYNFAGFIFITRCYSFTVEINREHLLSMYFI-RKIGT 74
+G +SNY NY F + + Y VEI +H+L Y I ++GT
Sbjct: 6227 KGTVSSNYDNYVFDIW---KQYYPQPVEIKHDHVLDHYDIHEELGT 6269
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 208 RGPTTSNYANYNFAGFIFITRCYSFTVEINREHLLSMYFI-RKIGT 74
+G +SNY NY F + + Y VEI +H+L Y I ++GT
Sbjct: 5908 KGTVSSNYDNYVFDIW---KQYYPQPVEIKHDHVLDHYDIHEELGT 5950
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 26.6 bits (56), Expect = 9.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 208 RGPTTSNYANYNFAGFIFITRCYSFTVEINREHLLSMYFI-RKIGT 74
+G +SNY NY F + + Y VEI +H+L Y I ++GT
Sbjct: 5117 KGTVSSNYDNYVFDIW---KQYYPQPVEIKHDHVLDHYDIHEELGT 5159
>AF067623-1|AAC17553.2| 640|Caenorhabditis elegans Hypothetical
protein T26C12.1 protein.
Length = 640
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 50 VPMFKSQAGTNFSNEIHTQQMFTIDFHGEGITSCNKNETRKIIIGVITGGRTSCESARV 226
VPMF+S + + + ++ GE I N + RKI+ + R+ +SA V
Sbjct: 566 VPMFQSSVAVDLARTRYDNVAKSLGSWGETIDESNADSARKILDEALAVCRSGEQSALV 624
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,427,094
Number of Sequences: 27780
Number of extensions: 265477
Number of successful extensions: 523
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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