Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0620
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.43 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   2.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.3  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 149 CNKNETRKIIIGVITGGRTSCESARV 226
           CNK   RK+I GV+ G  +S  S +V
Sbjct: 203 CNKTAVRKVISGVV-GAASSVTSIQV 227


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 131 GEGITSCNKNETRKIIIGV 187
           G  +  C  NET K IIGV
Sbjct: 8   GASVLICLLNETAKAIIGV 26


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 280 SNRNALLLHGRNRQSGGTHPRGLT 209
           +  NA+LL GR+++S    P G T
Sbjct: 366 TKENAMLLSGRSQKSTTGPPPGPT 389


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 166 GFIFITRCYSFTVEINREHLLS 101
           GF+  + C S T   ++EH+L+
Sbjct: 627 GFLNNSMCTSTTTSPDKEHVLA 648


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,804
Number of Sequences: 438
Number of extensions: 3794
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)