Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0620
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger) fa...    30   0.96 
At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein si...    29   1.7  
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea...    27   5.1  
At1g52000.1 68414.m05866 jacalin lectin family protein similar t...    27   9.0  

>At2g26130.1 68415.m03135 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 398

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +2

Query: 38  VLSDVPMFKSQAGTNFSNEIHTQQMFTIDFHGEGITSCNKNETRKIIIGVITGGRTSCES 217
           ++ D+P  K       +++I+  QMF++D  G     C++   R I + ++ G   +C  
Sbjct: 148 IIIDIPAQKETCNICLNDDINADQMFSVDKSGH--MCCSECVKRHIEVRLLEGSLITCPH 205

Query: 218 AR 223
            R
Sbjct: 206 YR 207


>At3g23640.1 68416.m02973 glycosyl hydrolase family 31 protein
           similar to alpha-glucosidase II from SP:Q9F234 [Bacillus
           thermoamyloliquefaciens]; contains Pfam profile: PF01055
           Glycosyl hydrolases family 31
          Length = 991

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 402 HSPPGVKWLLEPIDIHNVNAPPTLRYKF*GLTYSYN 295
           H P G++WL   IDI+         Y+  G T  YN
Sbjct: 783 HVPSGIQWLHSRIDINGYEEYSGTEYRSAGCTEEYN 818


>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
           sapiens]
          Length = 726

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -2

Query: 280 SNRNALLLHGRNRQSGGTHPRGLTRGPTTSNYANYNFAGFIFITR 146
           SN+ +L     NR S    P   + GP+  N    N    IF+TR
Sbjct: 288 SNQTSLAAENENRTSSPPLPLATSSGPSGPNSVPGNSPSNIFLTR 332


>At1g52000.1 68414.m05866 jacalin lectin family protein similar to
           myrosinase binding protein [Brassica napus] GI:1711296,
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile: PF01419
           jacalin-like lectin domain
          Length = 730

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 74  GTNFSNEIHTQQMFTIDFHGEGITSCNKNETRKIIIGVITGGRTSCESARVGTTTLPISA 253
           G  F +  HT Q F  +++G+G T  +     K IIG    G        +G   +PIS+
Sbjct: 519 GIQFQSNKHTSQYFGYEYYGDG-TQFSLQVNEKKIIGF--HGFADSHLNSLGAYFVPISS 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,355
Number of Sequences: 28952
Number of extensions: 252778
Number of successful extensions: 450
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)