Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0619
(339 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical pr... 71 2e-13
Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical pr... 42 1e-04
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 38 0.002
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 37 0.003
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 37 0.003
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 35 0.013
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 35 0.013
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 35 0.013
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 35 0.017
U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family prot... 34 0.023
Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical pr... 33 0.040
Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical p... 33 0.040
Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical pr... 33 0.040
Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical pr... 33 0.040
U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding pro... 33 0.040
U68253-1|AAB16968.1| 65|Caenorhabditis elegans rab6-like protein. 33 0.040
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 33 0.040
Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical pr... 33 0.052
Z47808-1|CAA87774.2| 229|Caenorhabditis elegans Hypothetical pr... 33 0.069
U68254-1|AAB16969.1| 67|Caenorhabditis elegans rab6-like protein. 33 0.069
U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family pro... 32 0.12
AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical ... 32 0.12
Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical pr... 31 0.21
U68260-1|AAB16975.1| 69|Caenorhabditis elegans rab19-like prot... 31 0.21
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 31 0.21
AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical ... 31 0.21
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 31 0.21
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 31 0.21
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 31 0.28
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 31 0.28
Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical pr... 30 0.37
Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical pr... 30 0.49
Z22178-5|CAA80155.1| 207|Caenorhabditis elegans Hypothetical pr... 30 0.49
U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein. 30 0.49
U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein. 30 0.49
U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family pro... 30 0.49
U23938-1|AAA65452.1| 35|Caenorhabditis elegans pra-1 protein. 30 0.49
AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein. 30 0.49
U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family prot... 29 0.85
U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like prot... 29 0.85
Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical pr... 29 1.1
U68261-1|AAB16976.1| 53|Caenorhabditis elegans rab19-like prot... 29 1.1
U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical pr... 28 1.5
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 28 1.5
Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical p... 28 2.0
U41276-1|AAA82469.1| 238|Caenorhabditis elegans Hypothetical pr... 28 2.0
L36965-1|AAC37216.1| 192|Caenorhabditis elegans guanine nucleot... 28 2.0
DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GL... 28 2.0
AL132952-3|CAB63379.1| 192|Caenorhabditis elegans Hypothetical ... 28 2.0
AL021475-2|CAA16313.1| 187|Caenorhabditis elegans Hypothetical ... 28 2.0
AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family pr... 28 2.0
AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein. 28 2.0
AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical ... 27 4.5
Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical pr... 26 6.0
AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L prot... 26 6.0
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 26 6.0
>Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical
protein F26H9.6 protein.
Length = 208
Score = 70.9 bits (166), Expect = 2e-13
Identities = 38/52 (73%), Positives = 40/52 (76%)
Frame = +3
Query: 183 MATNRTGAAQRPNGAPQTKVCQFKLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
MA G A RP G +T CQFKLVLLG+SAVGKSSLVLRFVKGQFHE QE
Sbjct: 1 MAARNAGTA-RPGGPNRT--CQFKLVLLGESAVGKSSLVLRFVKGQFHEYQE 49
>Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical
protein T01B7.3 protein.
Length = 207
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = +3
Query: 237 KVCQFKLVLLGQSAVGKSSLVLRFVKGQF 323
K +FK+VLLG+ VGKSSLVLRFV+ +F
Sbjct: 9 KSFKFKIVLLGEGCVGKSSLVLRFVENKF 37
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFH 326
FK+VL+G S VGKS+L+ RF + +FH
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFH 37
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHES 332
FKL+++G S VGKSSL+LRF F E+
Sbjct: 11 FKLLIIGDSGVGKSSLLLRFADNTFSEN 38
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 37.1 bits (82), Expect = 0.003
Identities = 16/28 (57%), Positives = 21/28 (75%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHES 332
FKL+++G S VGKSSL+LRF F E+
Sbjct: 11 FKLLIIGDSGVGKSSLLLRFADNTFSEN 38
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 35.1 bits (77), Expect = 0.013
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHES 332
FKL+L+G S VGKS L+LRF + ES
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTES 39
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 35.1 bits (77), Expect = 0.013
Identities = 16/28 (57%), Positives = 20/28 (71%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHES 332
FKL+L+G S VGKS L+LRF + ES
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTES 39
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 35.1 bits (77), Expect = 0.013
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFH 326
FK+VL+G S VGKS+L+ RF + +F+
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFN 37
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 34.7 bits (76), Expect = 0.017
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +3
Query: 252 KLVLLGQSAVGKSSLVLRFVKGQFHESQ 335
K++++G+S VGKSSL+LRFV F Q
Sbjct: 13 KILIIGESGVGKSSLMLRFVDDVFDPEQ 40
>U43283-2|AAC69020.1| 205|Caenorhabditis elegans Rab family protein
6.2 protein.
Length = 205
Score = 34.3 bits (75), Expect = 0.023
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 246 QFKLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
+FKLV LG+ +VGK+SL+ RF+ F + +
Sbjct: 10 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ 40
>Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical
protein W04G5.2 protein.
Length = 198
Score = 33.5 bits (73), Expect = 0.040
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFH 326
FK+VL+G VGKS+L+ RF + +F+
Sbjct: 9 FKIVLIGNPGVGKSNLLSRFTRNEFN 34
>Z81039-10|CAB02777.2| 181|Caenorhabditis elegans Hypothetical
protein C25D7.7 protein.
Length = 181
Score = 33.5 bits (73), Expect = 0.040
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 246 QFKLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
+FK+V+LG VGKS+L ++FV F E +
Sbjct: 3 EFKVVVLGSGGVGKSALTVQFVSSTFIEKYD 33
>Z35719-7|CAA84796.1| 211|Caenorhabditis elegans Hypothetical
protein F17C8.4 protein.
Length = 211
Score = 33.5 bits (73), Expect = 0.040
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +3
Query: 234 TKVCQFKLVLLGQSAVGKSSLVLRFVKGQF 323
+K+ +KLV++G VGKSSL ++F + QF
Sbjct: 13 SKLPYYKLVVIGDGGVGKSSLTIQFFQKQF 42
>Z11505-4|CAA77590.1| 205|Caenorhabditis elegans Hypothetical
protein F59B2.7 protein.
Length = 205
Score = 33.5 bits (73), Expect = 0.040
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 246 QFKLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
+FKLV LG+ +VGK+S++ RF+ F + +
Sbjct: 11 KFKLVFLGEQSVGKTSIITRFMYDSFDNTYQ 41
>U80675-1|AAB38969.1| 211|Caenorhabditis elegans GTP binding
protein protein.
Length = 211
Score = 33.5 bits (73), Expect = 0.040
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +3
Query: 234 TKVCQFKLVLLGQSAVGKSSLVLRFVKGQF 323
+K+ +KLV++G VGKSSL ++F + QF
Sbjct: 13 SKLPYYKLVVIGDGGVGKSSLTIQFFQKQF 42
>U68253-1|AAB16968.1| 65|Caenorhabditis elegans rab6-like protein.
Length = 65
Score = 33.5 bits (73), Expect = 0.040
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 246 QFKLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
+FKLV LG+ +VGK+S++ RF+ F + +
Sbjct: 11 KFKLVFLGEQSVGKTSIITRFMYDSFDNTYQ 41
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 33.5 bits (73), Expect = 0.040
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQF 323
F++V+ G +AVGKSS V+R ++ QF
Sbjct: 462 FRIVMCGDAAVGKSSFVMRVIRRQF 486
>Z35640-1|CAA84705.1| 307|Caenorhabditis elegans Hypothetical
protein F43D9.2 protein.
Length = 307
Score = 33.1 bits (72), Expect = 0.052
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
FK++++G +AVGK+ L RF G+F E E
Sbjct: 101 FKVIIVGNAAVGKTCLSFRFCCGRFPEHTE 130
>Z47808-1|CAA87774.2| 229|Caenorhabditis elegans Hypothetical
protein D2013.1 protein.
Length = 229
Score = 32.7 bits (71), Expect = 0.069
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +3
Query: 246 QFKLVLLGQSAVGKSSLVLRFVKGQFHE 329
Q++L+++G S VGKSSL+ F +G+ E
Sbjct: 17 QYRLIVIGDSTVGKSSLLRYFTEGKMAE 44
>U68254-1|AAB16969.1| 67|Caenorhabditis elegans rab6-like protein.
Length = 67
Score = 32.7 bits (71), Expect = 0.069
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 246 QFKLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
+F+LV LG+ +VGK+SL+ RF+ F + +
Sbjct: 10 KFELVFLGEQSVGKTSLITRFMYDSFDNTYQ 40
>U28944-14|AAK68195.1| 233|Caenorhabditis elegans Rab family
protein 3, isoform a protein.
Length = 233
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +3
Query: 186 ATNRTGAAQRPNGAPQTKVCQ-----FKLVLLGQSAVGKSSLVLRFVKGQF 323
A +R A +P GA + Q FKL+++G S+VGK+S + R+ F
Sbjct: 11 ARSRMAAGGQPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSF 61
>AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical
protein Y45F3A.2 protein.
Length = 216
Score = 31.9 bits (69), Expect = 0.12
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHESQ 335
FK+VL+G + VGK+ LV +F +G F Q
Sbjct: 8 FKVVLVGNAGVGKTCLVRKFTQGIFPPGQ 36
>Z92830-4|CAB07357.1| 203|Caenorhabditis elegans Hypothetical
protein F11A5.4 protein.
Length = 203
Score = 31.1 bits (67), Expect = 0.21
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQF 323
FK V++G VGKS+L+LRF+ F
Sbjct: 7 FKYVIIGDRGVGKSNLLLRFIGKPF 31
>U68260-1|AAB16975.1| 69|Caenorhabditis elegans rab19-like
protein.
Length = 69
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHESQ 335
FK+VL+G VGK+ +V RF G F + Q
Sbjct: 11 FKIVLVGDMGVGKTCVVQRFRNGTFVDRQ 39
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 31.1 bits (67), Expect = 0.21
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHES 332
FKL+L+G S VGK+ ++ RF F+ S
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSDDSFNNS 36
>AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical
protein Y62E10A.9 protein.
Length = 210
Score = 31.1 bits (67), Expect = 0.21
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHESQ 335
FK+VL+G VGK+ +V RF G F + Q
Sbjct: 11 FKIVLVGDMGVGKTCVVQRFRNGTFVDRQ 39
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 31.1 bits (67), Expect = 0.21
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHES 332
FKL+L+G S VGK+ ++ RF F+ S
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSDDSFNNS 36
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 31.1 bits (67), Expect = 0.21
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHES 332
FKL+L+G S VGK+ ++ RF F+ S
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSDDSFNNS 36
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 30.7 bits (66), Expect = 0.28
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 246 QFKLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
++KLV++G VGKS+L ++ ++ F E +
Sbjct: 3 EYKLVVVGDGGVGKSALTIQLIQNHFVEEYD 33
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 30.7 bits (66), Expect = 0.28
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 246 QFKLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
++KLV++G VGKS+L ++ ++ F E +
Sbjct: 6 EYKLVVVGDGGVGKSALTIQLIQNHFVEEYD 36
>Z92830-3|CAB07356.1| 201|Caenorhabditis elegans Hypothetical
protein F11A5.3 protein.
Length = 201
Score = 30.3 bits (65), Expect = 0.37
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQF 323
FK V++G VGKS+L+LRF F
Sbjct: 7 FKYVIIGDGGVGKSNLLLRFTDELF 31
>Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical
protein K01G5.4 protein.
Length = 215
Score = 29.9 bits (64), Expect = 0.49
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHE 329
FKLVL+G GK++ V R + G+F +
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEK 36
>Z22178-5|CAA80155.1| 207|Caenorhabditis elegans Hypothetical
protein F54C8.5 protein.
Length = 207
Score = 29.9 bits (64), Expect = 0.49
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 252 KLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
K+ ++G VGKS+LVLRF + F E E
Sbjct: 15 KVAVMGYPHVGKSALVLRFTQNIFPERYE 43
>U68266-1|AAB16981.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 183 MATNRTGAAQRPNGAPQTKVCQFKLVLLGQSAVGKSSLVLRFVKGQF 323
MA P Q FKL+++G S+VGK+S + R+ F
Sbjct: 1 MAAGGQPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSF 47
>U68265-1|AAB16980.1| 219|Caenorhabditis elegans RAB-3 protein.
Length = 219
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 183 MATNRTGAAQRPNGAPQTKVCQFKLVLLGQSAVGKSSLVLRFVKGQF 323
MA P Q FKL+++G S+VGK+S + R+ F
Sbjct: 1 MAAGGQPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSF 47
>U28944-15|AAK68196.1| 219|Caenorhabditis elegans Rab family
protein 3, isoform b protein.
Length = 219
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 183 MATNRTGAAQRPNGAPQTKVCQFKLVLLGQSAVGKSSLVLRFVKGQF 323
MA P Q FKL+++G S+VGK+S + R+ F
Sbjct: 1 MAAGGQPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSF 47
>U23938-1|AAA65452.1| 35|Caenorhabditis elegans pra-1 protein.
Length = 35
Score = 29.9 bits (64), Expect = 0.49
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +3
Query: 258 VLLGQSAVGKSSLVLRFV 311
+++G+S VGKSSL+LRFV
Sbjct: 1 LIIGESGVGKSSLMLRFV 18
>AB112928-1|BAD07033.1| 219|Caenorhabditis elegans Rab3 protein.
Length = 219
Score = 29.9 bits (64), Expect = 0.49
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 183 MATNRTGAAQRPNGAPQTKVCQFKLVLLGQSAVGKSSLVLRFVKGQF 323
MA P Q FKL+++G S+VGK+S + R+ F
Sbjct: 1 MAAGGQPQGATPGQPDQNFDYMFKLLIIGNSSVGKTSFLFRYCDDSF 47
>U80033-5|AAC48200.1| 201|Caenorhabditis elegans Rab family protein
10 protein.
Length = 201
Score = 29.1 bits (62), Expect = 0.85
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFH 326
FKL+L+G S VGK+ ++ RF F+
Sbjct: 10 FKLLLIGDSGVGKTCILYRFSDDAFN 35
>U68257-1|AAB16972.1| 124|Caenorhabditis elegans rab10-like
protein.
Length = 124
Score = 29.1 bits (62), Expect = 0.85
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFH 326
FKL+L+G S VGK+ ++ RF F+
Sbjct: 10 FKLLLIGDSGVGKTCILYRFSDDAFN 35
>Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical
protein W03C9.3 protein.
Length = 209
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 237 KVCQFKLVLLGQSAVGKSSLVLRFVKGQF 323
K K+++LG S VGK+SL+ ++V +F
Sbjct: 6 KKALLKVIILGDSGVGKTSLMNQYVNRRF 34
>U68261-1|AAB16976.1| 53|Caenorhabditis elegans rab19-like
protein.
Length = 53
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQFHESQ 335
FK+VL+ + VGK+ LV +F +G F Q
Sbjct: 8 FKVVLVPNAGVGKTCLVRKFTQGIFPPGQ 36
>U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical
protein K02E10.1 protein.
Length = 218
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQF 323
FK+V++G GKS ++LRF + F
Sbjct: 7 FKIVVVGDHNCGKSCILLRFAENSF 31
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQF 323
FK+V +G SAVGK+ + RF +F
Sbjct: 203 FKVVFVGDSAVGKTCFLHRFCHNRF 227
>Z48621-11|CAE17932.2| 212|Caenorhabditis elegans Hypothetical
protein R07B1.12 protein.
Length = 212
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQF 323
+K++++G VGK+S++ RFV F
Sbjct: 12 YKVLVIGDPGVGKTSIIRRFVHNVF 36
>U41276-1|AAA82469.1| 238|Caenorhabditis elegans Hypothetical
protein C52B11.5 protein.
Length = 238
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +3
Query: 252 KLVLLGQSAVGKSSLVLRFVKGQFHESQE 338
K++++G GKS+ + R G+FHE ++
Sbjct: 26 KIIVVGAKNAGKSTFIERVEFGKFHEEKQ 54
>L36965-1|AAC37216.1| 192|Caenorhabditis elegans guanine nucleotide
regulatory proteinprotein.
Length = 192
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 252 KLVLLGQSAVGKSSLVLRFVKGQF 323
KLV++G A GK+ L++ F K QF
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQF 30
>DQ016970-1|AAY42967.1| 212|Caenorhabditis elegans Rab GTPase GLO-1
protein.
Length = 212
Score = 27.9 bits (59), Expect = 2.0
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 249 FKLVLLGQSAVGKSSLVLRFVKGQF 323
+K++++G VGK+S++ RFV F
Sbjct: 12 YKVLVIGDPGVGKTSIIRRFVHNVF 36
>AL132952-3|CAB63379.1| 192|Caenorhabditis elegans Hypothetical
protein Y51H4A.3 protein.
Length = 192
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 252 KLVLLGQSAVGKSSLVLRFVKGQF 323
KLV++G A GK+ L++ F K QF
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQF 30
>AL021475-2|CAA16313.1| 187|Caenorhabditis elegans Hypothetical
protein Y32F6B.3 protein.
Length = 187
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 246 QFKLVLLGQSAVGKSSLVLRFVKGQF 323
+ KLV++G + GK+SL++ + K QF
Sbjct: 4 KLKLVVVGDTYTGKTSLLVAYTKKQF 29
>AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family
protein 37 protein.
Length = 196
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 252 KLVLLGQSAVGKSSLVLRFVKGQF 323
K++LLG S GK+ L++R+ G F
Sbjct: 4 KVMLLGDSCTGKTCLLIRYKDGAF 27
>AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein.
Length = 196
Score = 27.9 bits (59), Expect = 2.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 252 KLVLLGQSAVGKSSLVLRFVKGQF 323
K++LLG S GK+ L++R+ G F
Sbjct: 4 KVMLLGDSCTGKTCLLIRYKDGAF 27
>AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical
protein Y54E10BR.1 protein.
Length = 912
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -2
Query: 236 CLWSAIGPLCGSGPVCRHIPPCHCSSVLNFFLGDRSSR 123
CL I P + V HIP C S ++ FL R SR
Sbjct: 577 CLVLCIFPFLPAVGVSTHIPLCILSPIITAFLCHRLSR 614
>Z78012-6|CAB01416.1| 480|Caenorhabditis elegans Hypothetical
protein C52E4.6a protein.
Length = 480
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 158 RSYSDREGYGDKQDRSRTEAQWRSTDK 238
R +DR+G GD++DR + R +K
Sbjct: 415 RRSNDRDGRGDRRDRDKDRGDRRKDEK 441
>AY557405-1|AAS64750.1| 480|Caenorhabditis elegans cyclin L
protein.
Length = 480
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 158 RSYSDREGYGDKQDRSRTEAQWRSTDK 238
R +DR+G GD++DR + R +K
Sbjct: 415 RRSNDRDGRGDRRDRDKDRGDRRKDEK 441
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +3
Query: 141 QEKVQNGATVTGRDMATNRTGAAQRPNGAPQTKVCQFKLVLLGQSAVG 284
Q++ Q A + +R + +RPN K+ + +L+GQ G
Sbjct: 2282 QQQQQQQAAAVAASSSASRKASRKRPNNDNDAKMRAMQQMLMGQGGSG 2329
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,960,430
Number of Sequences: 27780
Number of extensions: 157254
Number of successful extensions: 590
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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