Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0619
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.081
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   0.57 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   0.57 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   3.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   4.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    20   9.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   9.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 0.081
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 131 ICRPRKSSERSYSDREGYGDKQDRSRTEAQWRSTDKSLPV 250
           I  P K S+   S     G K  R+ TEA W S +  + V
Sbjct: 126 IVMPEKMSDEKISTLYALGAKIIRTPTEASWHSPEAHISV 165


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 0.57
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 116 RDTEIIINYTLKQI*SLIVNVKLEN 42
           RDT ++ +  LKQI S   NV+L N
Sbjct: 448 RDTCLLASDALKQILSAAYNVELHN 472


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 0.57
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 116 RDTEIIINYTLKQI*SLIVNVKLEN 42
           RDT ++ +  LKQI S   NV+L N
Sbjct: 486 RDTCLLASDALKQILSAAYNVELHN 510


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -3

Query: 268 PNNTSLNWQTFVCGAPLGLCAAPVLFVAISLPVTVAPF*TFS 143
           PN  SL WQ +     + LC        +S  V+V     FS
Sbjct: 95  PNELSLFWQQYPWVLGVSLCKIRAYVSEMSSYVSVLTIVAFS 136


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 277 ADWPNNTSLNWQTFV 233
           A W  NT LN  TF+
Sbjct: 322 ACWDTNTELNPNTFI 336


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 191 KQDRSRTEAQWRSTDKSLPVQAGVVGPVCG 280
           +Q+R R  A  ++    +   A VVGPV G
Sbjct: 600 RQERMRYAAPHKAFTYRMHGYASVVGPVKG 629


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 325 WNCPLTNRSTREDLPT 278
           WN P+ +  +R+D+ T
Sbjct: 100 WNFPMISVFSRQDIET 115


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 6/17 (35%), Positives = 8/17 (47%)
 Frame = +1

Query: 184 WRQTGPEPHRGPMALHR 234
           W   GP  HR P  + +
Sbjct: 320 WNFRGPRTHRMPQLIRK 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,503
Number of Sequences: 438
Number of extensions: 1999
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)