Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0618
         (616 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       27   0.17 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    24   0.88 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    24   0.88 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   8.2  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 377 KSQHESRDGDA-VHGEYTLLEAD-GSVRKVEYTAD 475
           K + E R  D  + GEY ++  D GS+R V YTAD
Sbjct: 204 KYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -1

Query: 349 GVSEVVFRVSIFFF---MVAGDKYFV 281
           GVS VV  ++IFFF   + AG+ YF+
Sbjct: 532 GVSFVVIVITIFFFTANVQAGELYFM 557


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
 Frame = -1

Query: 349 GVSEVVFRVSIFFF---MVAGDKYFV 281
           GVS VV  ++IFFF   + AG+ YF+
Sbjct: 257 GVSFVVIVITIFFFTANVQAGELYFM 282


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 6   PSRPATSPCHQ 38
           PS P+ S CHQ
Sbjct: 130 PSDPSVSSCHQ 140


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,925
Number of Sequences: 336
Number of extensions: 1199
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)