Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0618
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    27   1.6  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    26   3.8  
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.6  

>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 377 KSQHESRDGDAVHGEYTLLEADGS 448
           K+  +S  GD++HG Y++LE  G+
Sbjct: 395 KAIRDSMVGDSIHGLYSILETSGA 418


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
 Frame = +2

Query: 302 HHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGD----AVHG-EYTLLEADGSVRKVEY 466
           HH  +Y H  +D  +   D HS D+ S   S          HG  +  +E  GS  K E 
Sbjct: 17  HHTHDYDHHNHD--HHGHDHHSHDSSSNSSSEAARLQFIQEHGHSHDAMETPGSYLKREL 74

Query: 467 TADDHHGFN 493
              +H  F+
Sbjct: 75  PQFNHRDFS 83


>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +3

Query: 288 YLSPATMKKNMLTLNTTSL 344
           Y+S AT+K N+L+LNT ++
Sbjct: 93  YVSEATLKGNVLSLNTFNI 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,026
Number of Sequences: 5004
Number of extensions: 19250
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)