Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0618
         (616 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078           30   1.7  
07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130...    29   3.9  
02_02_0426 - 10087547-10089054,10090744-10090762                       28   6.8  
08_02_0602 + 19183549-19184919                                         27   8.9  

>01_01_0345 + 2752790-2753102,2753309-2754079,2755795-2756078
          Length = 455

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -2

Query: 477 SSAVYSTLRTEPSASNKVYSPCTASPSRDSC*DL 376
           +S+V    R++PS S+ + SPC ASP RD+  +L
Sbjct: 389 ASSVGPLFRSQPS-SDSLQSPCKASPCRDASFEL 421


>07_03_1093 +
           23912303-23912467,23912671-23912801,23913079-23913087,
           23913146-23913228,23914494-23914596,23915988-23916066,
           23916174-23916274,23916371-23916479
          Length = 259

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 365 SGDNKSQHESRDGDAVHGEYTLLEADGSVRKVEYTADDHHGFNAVVSNTG 514
           S DN  +       +  G Y L+  D +V  VEY+     G+N VV+  G
Sbjct: 92  SADNTVRRSLMLAFSSGGNYFLVRHDAAVSCVEYSYSTVSGYNLVVATAG 141


>02_02_0426 - 10087547-10089054,10090744-10090762
          Length = 508

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 489 KPWWSSAVYSTLRTEPSASNKVYSPCTASPSRDSC 385
           +PWW     + +   P A      PC  SPS   C
Sbjct: 437 RPWWEKEAATAVPDPPCARVATPEPCFHSPSYYEC 471


>08_02_0602 + 19183549-19184919
          Length = 456

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +2

Query: 248 AAPEARVIAPAHKVLVAGHHEEE---YAHPKYDFAYSVADGHSGDNKSQHESRDG 403
           A  +  V +    +L++  HE     YA+ + D A   ADGH   ++SQ E   G
Sbjct: 214 ACADLDVTSSNQPLLLSAEHEVVDALYANQEADAAILHADGHHNQDESQREHHHG 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,542,289
Number of Sequences: 37544
Number of extensions: 147905
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)