Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0618
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)     30   1.3  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)         28   5.2  
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)               28   5.2  
SB_46036| Best HMM Match : PSRT (HMM E-Value=1)                        28   6.9  
SB_24984| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  

>SB_31903| Best HMM Match : Amino_oxidase (HMM E-Value=3.36312e-44)
          Length = 1021

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = +2

Query: 299 GHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRKVEYTADD 478
           GH + +  H K +  +   D   G    +HE  +GD  HG+  +   +G +++ + + + 
Sbjct: 332 GHEKGDMQHGKKNMGHEKGDMQHGKKNMEHE--EGDMQHGKKNMGHEEGDMQQGKKSMEH 389

Query: 479 HHG 487
             G
Sbjct: 390 EKG 392



 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 299 GHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVR 454
           GH E +  H K +  +   D   G    +HE  +GD  HG+  +    G ++
Sbjct: 248 GHEEGDMQHGKKNIEHEKGDMQHGKKNVEHE--EGDMQHGKKNMEHEKGDMQ 297



 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +2

Query: 281 HKVLVAGHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVR 454
           H+    GH + +  H K +  +   D   G    +HE   GD  HG+  +   +G ++
Sbjct: 228 HEKKNMGHEKGDMQHGKKNMGHEEGDMQHGKKNIEHEK--GDMQHGKKNVEHEEGDMQ 283



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/63 (22%), Positives = 25/63 (39%)
 Frame = +2

Query: 299 GHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRKVEYTADD 478
           GH + +  H K +  +   D   G     HE  +GD  HG+  +    G ++  +   + 
Sbjct: 220 GHEKGDMQHEKKNMGHEKGDMQHGKKNMGHE--EGDMQHGKKNIEHEKGDMQHGKKNVEH 277

Query: 479 HHG 487
             G
Sbjct: 278 EEG 280



 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 302 HHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVR 454
           H E +  H K +  +   D   G    +HE   GD  HG+  +   +G ++
Sbjct: 361 HEEGDMQHGKKNMGHEEGDMQQGKKSMEHEK--GDMQHGKKNMGHEEGDMQ 409



 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 299 GHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVR 454
           GH E +  H K +  +   D   G    +HE  +GD  H +  +   +G ++
Sbjct: 402 GHEEGDMQHGKKNMGHEEGDMQHGKKNMEHE--EGDMQHRKKNMGHEEGDMQ 451


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 335  DFAYSVADGHSGDNKSQHESRDGDAV--HGEYTLLEADGSVRKVEYTAD 475
            D  +   +   GD+  +H+  DGD+V  H +Y     D  VR  +Y  D
Sbjct: 1863 DVRHDEYNDEDGDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911


>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
          Length = 1052

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -2

Query: 498 TALKPWWSSAVYSTLRTEPSASNKVYSPCTASPSRDSC*DLLSPLCPSATE*AKSY 331
           T+  P +S A  S   T PS S  + S   ASPS        +P  PS T  + SY
Sbjct: 704 TSASPSYSPASPSYSPTSPSYSPAIPSNSPASPSYSPASPSYTPASPSYTPASPSY 759


>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
          Length = 659

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 504 LTTALKPWWSSAVYSTLRTEPSASNKVYSPCTASPSRDS 388
           LTT+++P  SS ++ T  T P  +  V S     P   S
Sbjct: 37  LTTSIQPQTSSPIFHTTSTRPQTTTTVGSTILTQPQTSS 75


>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
          Length = 878

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +2

Query: 281 HKVLVAGHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAV-HGEYTLLEADGSVRK 457
           H+   A HH ++  HP+ D     AD H  D  ++H  +D D +    +T+ +   ++ K
Sbjct: 671 HRRQDADHHRQDVVHPRQD-----ADHHRQD--AEHHRQDADHIAKTSFTIGKTSVTIAK 723

Query: 458 VEYT 469
              T
Sbjct: 724 TSVT 727


>SB_24984| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +2

Query: 299 GHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSVRK 457
           GH  ++      D  +   DGH GD+   H+  DG+    +     +DG V K
Sbjct: 157 GHGGDDDTEDGDDDGHDNDDGHGGDDYDGHDGDDGNDRGDDNDNDNSDGEVLK 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,353,211
Number of Sequences: 59808
Number of extensions: 160581
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)