Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0618
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75537-1|CAA99834.1|  455|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   6.1  
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase...    27   8.1  
U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase ...    27   8.1  

>Z75537-1|CAA99834.1|  455|Caenorhabditis elegans Hypothetical
           protein F18E2.1 protein.
          Length = 455

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +2

Query: 266 VIAPAHKVLVAGHHEEEYAH-PKYDFAYSVADGHSGDNKSQHESRDGDAVH 415
           +I+    +++AG+HE++Y +   Y   +SV D  +G N +Q  S D   VH
Sbjct: 175 LISKVPYMVIAGNHEDDYQNFTNYQKRFSVPD--NGHNDNQFYSFDLGPVH 223


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 22/72 (30%), Positives = 27/72 (37%)
 Frame = +2

Query: 272 APAHKVLVAGHHEEEYAHPKYDFAYSVADGHSGDNKSQHESRDGDAVHGEYTLLEADGSV 451
           APAH     GHH E +  P +   +     H G + S H S      HGE+    A    
Sbjct: 464 APAHH----GHHGEHHHAPAHHGHHGEHGTHHGHHGS-HHSPAHHGHHGEHHHAPAHHGH 518

Query: 452 RKVEYTADDHHG 487
                T   HHG
Sbjct: 519 HGEHGTHHGHHG 530


>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
           (b) subunit protein2 protein.
          Length = 1193

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 344 YSVADGHSGDNKSQHESRDG 403
           YS+A G+ GD K  H+SR G
Sbjct: 452 YSLATGNWGDQKKAHQSRAG 471


>U10333-1|AAA50224.1|  859|Caenorhabditis elegans RNA polymerase II,
           second largestsubunit protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 344 YSVADGHSGDNKSQHESRDG 403
           YS+A G+ GD K  H+SR G
Sbjct: 253 YSLATGNWGDQKKAHQSRAG 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,098,608
Number of Sequences: 27780
Number of extensions: 107157
Number of successful extensions: 394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)