Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0617
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   138   5e-34
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  138 bits (335), Expect = 5e-34
 Identities = 74/152 (48%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
 Frame = +3

Query: 3   VGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP-NIL*RXXXXXXXXXXXX 179
           VG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++   +L              
Sbjct: 301 VGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGL 360

Query: 180 XXXILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFTGLSLNSYILKIQ 359
              IL+NS +DI  HDTY+VVAHFHYVLS               P   GL  N  +  IQ
Sbjct: 361 TGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYYW-SPKMFGLMYNETLASIQ 419

Query: 360 FFTIFIGVNITFFPQHFLGLAGIPRRYSDYPD 455
           F+ +FIGVNI F PQHFLGL G+PRR  DYP+
Sbjct: 420 FWILFIGVNIVFGPQHFLGLNGMPRRIPDYPE 451


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 320 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFFRFSWNTSTIFRL 448
           +RPF KFL  K  IF + YW +  +  T +      T  I+ L
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGLLNGTGWIYSL 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,712
Number of Sequences: 5004
Number of extensions: 29291
Number of successful extensions: 76
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)