Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0615
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 29 0.52
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.69
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 27 2.1
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 27 2.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 3.7
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 4.8
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 26 4.8
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 8.5
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.5
>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 624
Score = 29.5 bits (63), Expect = 0.52
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 413 DNHREALKQDVDLDGKISSNEISGLLKQKDNMQDANQKPLFN 538
D+ R QD+D D K+ S ++S + Q N+ + + PL N
Sbjct: 466 DDLRNVFNQDLDFDEKMFSRQLSLVKGQAYNIVEVLKNPLMN 507
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.69
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Frame = +3
Query: 135 TIFETQSG---VPTMKTTEMNYTLGTRCPLS*IQWTSTEISPNICTKCFDRLEACSVTYS 305
T +ET+S VPT ++T T L+ +S+ S + T D + T +
Sbjct: 252 TFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTT--IDSTPSTIATST 309
Query: 306 HFSTTKTLIF---PESATCLPTKVPTTVTSEITI*NPAMTITERLS 434
TT + I P ++ LPT P+++++E+ + TIT+ S
Sbjct: 310 LQPTTSSPITTSAPSLSSALPTTYPSSLSTEVEVEYFTKTITDTSS 355
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 548 VPGRSFCQTIITTSVKKP--DGTVETRRIVKNGNEV-TEETVTSGPVTNIVNPTMDTMTP 718
V GRS TI TT+ + TVET + EET T+ V ++ PT+ T T
Sbjct: 236 VVGRSMVSTIRTTTPMEAMITPTVETTTLPTAAMTTPVEETTTTPMVETMITPTVVTTTT 295
Query: 719 SFI 727
+
Sbjct: 296 PMV 298
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -1
Query: 372 LEPSSEGKSLIPGKSKFSSWKNDCTSPNMLPNDRNISCICLVKSLWR 232
L P G+ +IP + W C S NM P D N + L+K R
Sbjct: 500 LIPVKNGRRVIP-RGLIGRWNRICASHNMDPEDVNNASPELLKEFVR 545
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 155 WGSDDEDDGDELYSRNE 205
W +D+EDDG++L S +E
Sbjct: 348 WVADEEDDGEDLESEDE 364
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -1
Query: 717 GVMVSIVGLTMFVTGPDVTVSSVTSLPFLTILLVSTVPSGFLTLVVIIV*QNDLPGT 547
G ++ + PDV V S+ PF+ + + +P+ +LVV+ ++ GT
Sbjct: 251 GKSETVAARALLAANPDVGVLSIRIFPFVAENIFNVLPTTCKSLVVLSQVRSTAVGT 307
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 619 CLYCSIRFLNTCCNNSLTE*SS 554
CL CS + ++T C+NSL SS
Sbjct: 561 CLNCSNKIIHTVCHNSLIYFSS 582
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +2
Query: 386 RDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQKDNMQDANQKPLFNGNL 547
R + P N+ LK++ L K ++ ++S + + + KPLF+G L
Sbjct: 145 RSRKINPQKGNNNNLLKENKSL--KTTAKDLSDISSSSMKKANNSSKPLFSGKL 196
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 128 PRNDFRNPIWGSDDEDDGDELYSRNEMSA 214
P ++ R P +++EDD DE S N S+
Sbjct: 103 PLSEDRKPTSNNEEEDDADEAKSSNADSS 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,982
Number of Sequences: 5004
Number of extensions: 74578
Number of successful extensions: 227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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