Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0615
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044...    29   3.8  
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029...    29   3.8  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    29   5.1  
05_05_0007 - 21465506-21466273                                         28   6.7  
05_05_0303 - 23958989-23960563,23962628-23962864,23963250-239634...    28   8.8  
04_03_0094 - 11113279-11114469                                         28   8.8  

>01_05_0662 - 24103475-24103735,24103831-24104085,24104280-24104451,
            24104535-24104762,24104864-24104997,24105101-24105184,
            24105273-24105563,24105660-24105992,24106081-24106334,
            24106435-24106591,24106674-24106777,24106879-24107039,
            24107216-24107529,24107614-24107895,24107991-24108292,
            24108367-24108457,24108566-24108619,24108785-24108861,
            24108963-24109207,24109322-24109410,24110811-24111254
          Length = 1443

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = -3

Query: 349  VADSGKIK-VFVVEK*LYVTEHASKRSKHFVHMFGEISVEVHWI 221
            V +SG ++ V VVE+ ++  E A+     F + FG++++E+ +I
Sbjct: 1237 VQNSGSVQPVVVVERTVFYRERAAGMYSAFPYAFGQVAIELPYI 1280


>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
            13504409-13504497,13504612-13504696,13504852-13505011,
            13505096-13505160,13505296-13505349,13505437-13505527,
            13505685-13505986,13506084-13506365,13506451-13506764,
            13506920-13507080,13507202-13507305,13507379-13507535,
            13507652-13507896,13507995-13508327,13508428-13508751,
            13508816-13508899,13509001-13509169,13509610-13509731,
            13510538-13510792,13511115-13511252
          Length = 1377

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -3

Query: 403  FQIVISDVTVVGTFVGRQVADSGKIK-VFVVEK*LYVTEHASKRSKHFVHMFGEISVEVH 227
            +Q V     +V   +   + +SG ++ V VVE+ ++  E A+     F + FG++++E+ 
Sbjct: 1194 YQFVSFHAVLVNCILYIGIQNSGCVQPVVVVERTVFYRERAAGMYSGFPYAFGQVAIELP 1253

Query: 226  WI 221
            +I
Sbjct: 1254 YI 1255


>04_01_0422 +
           5573833-5574647,5575577-5575692,5576922-5577130,
           5579676-5579795,5581616-5581744,5581828-5581953,
           5582945-5583000,5583084-5583183,5585155-5585272,
           5585374-5585583,5585902-5586226,5587094-5587187,
           5588021-5588129,5588246-5588514,5589153-5589280,
           5589983-5590217,5590858-5591046,5591326-5591609,
           5591698-5591890,5592040-5592207,5592429-5592514,
           5594391-5594550
          Length = 1412

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 132 GTIFETQSGVPTMKTTEMNYTLGTRCPLS*IQWTSTEISPNICTKC 269
           GTI+E  S + T+K +  NYT  T  PL  + +  T +  N+  +C
Sbjct: 325 GTIYE--SSLQTLKVSNGNYTTHTETPL--LGFPMTRLWSNVLVEC 366


>05_05_0007 - 21465506-21466273
          Length = 255

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 143 RNPIWGSDDEDDGDELYSRNEMSAIIDPMDLHRDFTKHMHEMFRSFG 283
           R    G DD+DDG   +    ++   D  D + DF   M EM  + G
Sbjct: 135 RRAAGGGDDDDDGAASFGGG-VAVAFDSEDPYEDFRASMAEMLAAHG 180


>05_05_0303 -
           23958989-23960563,23962628-23962864,23963250-23963449,
           23964088-23964250,23964348-23964554,23964667-23964798
          Length = 837

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 371 NHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQKDNMQ-DANQKPLFNGNL 547
           N  ++ D  +K G ++ RE   + V++ GKI S++      Q D M+ D+  KP   G  
Sbjct: 441 NTASLNDGEIKDGLNSSREDAIEVVEMVGKI-SHDRGSTDSQSDEMKVDSEDKPA--GTC 497

Query: 548 VPGRSF 565
             GR+F
Sbjct: 498 KWGRAF 503


>04_03_0094 - 11113279-11114469
          Length = 396

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 56  VTTAMANSAFMDKLRSFLGIRQEPPRNDFRNPIWGSDDE 172
           V+T + N+  +D L S + +R  PP+ D+     GSDD+
Sbjct: 354 VSTLLRNTPNLDVL-SLIPLRPRPPKPDYLYMFDGSDDD 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,005,311
Number of Sequences: 37544
Number of extensions: 467541
Number of successful extensions: 1334
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)