Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0615
         (735 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46149| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)                31   1.3  
SB_145| Best HMM Match : OATP (HMM E-Value=4.2)                        30   2.2  
SB_26876| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                29   5.2  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   29   5.2  
SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)                   28   6.8  
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_58445| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)                 28   9.0  
SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0)              28   9.0  
SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)                 28   9.0  
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_46149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 458 SHLNPHLV*EPLCDCHSRVSNS 393
           +H + +L+  P+CDCH+ VSNS
Sbjct: 7   AHASRNLIESPICDCHAHVSNS 28


>SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 912

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 667 IRPCDKHCQPYDGHHDP 717
           I  C K  QP+DGHHDP
Sbjct: 247 IEVCMKDIQPFDGHHDP 263


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = +2

Query: 317  DENFDFPGISDLPSDEGSNHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQ 496
            D ++ FP    LP+ E S    +   Y +P  DN    ++Q++    K    + +G+ +Q
Sbjct: 820  DNDYAFP----LPTIEKSQREPVEGVYSEPYSDNRNAQIRQNLQ-SRKTQPGQKNGVYEQ 874

Query: 497  KDNMQDANQKPL-FNGNLV 550
              N +D N +P  F G +V
Sbjct: 875  AYNEEDHNVQPADFPGYVV 893


>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
          Length = 792

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +2

Query: 344 SDLPSDEGSNHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQKDNMQDANQ 523
           SD P  +G   GN R    +  Y N  +AL+++    G  S ++    LK+K+    AN+
Sbjct: 536 SDGPDSDGLVEGNFRQEMFEK-YGNASDALRREYTRTGDNSRHDTLQTLKEKEGKIAANK 594

Query: 524 KPLFNGNLV 550
                  LV
Sbjct: 595 SNFCEDELV 603


>SB_145| Best HMM Match : OATP (HMM E-Value=4.2)
          Length = 264

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +2

Query: 326 FDFPGISDLPSDEGSNHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQKDN 505
           FD   + D   D+G N+G+  D Y    Y +  + +  D D D  +   E  G      N
Sbjct: 11  FDDGDVDDGDDDDGDNNGDDDDNYFLLCYASIHDGVDDDDDNDSYLLLKE--GYSNCSCN 68

Query: 506 MQDANQKPLFN--GNLVPG 556
               +   LFN  G+L PG
Sbjct: 69  HPQVSAPDLFNTTGHLSPG 87


>SB_26876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.5 bits (58), Expect(2) = 2.3
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 317 DENFDFPG-ISDLPSDEGSNHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNE 475
           D+N D  G + D  +D+ ++  N   Y +    D+H +  K+D D++ ++S+ E
Sbjct: 94  DDNGDDDGDVDDDNNDDDADINNGMVYDIHDNGDDHGDDRKKDHDIEEELSAQE 147



 Score = 21.0 bits (42), Expect(2) = 2.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 164 DDEDDGDELYSRN 202
           DD+DDGD++   N
Sbjct: 84  DDDDDGDDVDDDN 96


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 353 PSDEGSNHGNIRDYYLKPGYDNHREALKQDVDLDGKISSNEISGLLKQKDNMQDANQKPL 532
           PS   +NH   + + + P  D H E  + DVD+D  I   E    L ++DN+    ++P+
Sbjct: 509 PSMLATNHTKGKQF-VDPTSDKHLEDFETDVDVDDLILEEE--NELNERDNLSLYLKRPV 565


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
 Frame = +2

Query: 155  WGSDDEDDGDE-LYSRNEMSAII--DPMDLHRDFTKHMHEMFRSFGSMFGDVQSFFHDEN 325
            +GS +E++ DE L    EM  I   DP D +     H H+  +       + +  ++D+ 
Sbjct: 3180 YGSSEEEEEDEDLLDHREMYVIPEEDPDDPNHH---HHHQQTQQHDD--NEEEVLYYDQG 3234

Query: 326  FDFPGISDLPSDE 364
            FD P + D+  +E
Sbjct: 3235 FDNPALEDICEEE 3247


>SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 164 DDEDDGDELYSRNEMSAIIDPMDLHRDFTKHMHEMFR 274
           DDEDD D+ Y+ N++ +++ P         H+H+  R
Sbjct: 295 DDEDDNDDDYTENDIISLM-PYTFTSGLEPHLHQEAR 330


>SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
          Length = 441

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 1/115 (0%)
 Frame = +2

Query: 320 ENFDFPGISDLPSDEGSNHGNIRDYYLKPGYDNHREALKQD-VDLDGKISSNEISGLLKQ 496
           +N  F   S LP D+G N  NI      P + N     + D + +     +  I+ L   
Sbjct: 234 QNPSFWSASGLPDDDGENPFNI---LFGPSFYNKPLGFQADELQMFENQGAENIAELDVN 290

Query: 497 KDNMQDANQKPLFNGNLVPGRSFCQTIITTSVKKPDGTVETRRIVKNGNEVTEET 661
             N      +P   G ++   +  Q+I+    K  DG  +T   ++   +  E T
Sbjct: 291 NSNTNHNYNQPSTEGVVMENSAQFQSILDLIEKMTDGRTKTNWTLERNTKKRERT 345


>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1276

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 170  EDDGDELYSRNEMSAIIDPMDLHRDFTKH----MHEMFRSFGSMFGDVQSFFHDENF 328
            E D  + Y ++    +    D++ D TK      ++  +  G   G++QS+F DEN+
Sbjct: 939  EADNSQAYQQSMPDDLTGASDINDDLTKSDKSSQYQPDQQNGDSDGELQSYFPDENY 995


>SB_58445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +2

Query: 134 NDFRNPIWGSDDEDDGDELYSRNEMSAIIDPMDLHRDFTKHMHEMFR-SFGSMF 292
           ND +    GSD+ D+    Y RN   +  D  +  RD+ K     F  S+ +++
Sbjct: 62  NDRQRCETGSDERDETKPYYKRNSDKSCNDLQEYSRDYKKEKEPAFEISYDTLY 115


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 670  RPCDKHCQPYDGHHDP 717
            R C K  QPY+ HHDP
Sbjct: 994  RGCMKDIQPYEQHHDP 1009


>SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)
          Length = 649

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 113 IRQEPPRNDFRNPIWGSDDE 172
           +R++PPRN  R PI+G D E
Sbjct: 31  LRRDPPRNLLRLPIFGKDME 50


>SB_31994| Best HMM Match : CPSase_L_chain (HMM E-Value=0)
          Length = 945

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 230 DLHRDFTK-HMHEMFRSFGSMFGD 298
           D+H DF K HM ++F + GSM GD
Sbjct: 528 DVHTDFIKQHMADLFPAKGSMPGD 551


>SB_31382| Best HMM Match : RVT_1 (HMM E-Value=2.2e-12)
          Length = 1799

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 467  SNEISGLLKQKDNMQDANQKPLFNGNLVPGRSFCQTIITTSVKKPDGTVETRRIVKNGNE 646
            + EI  +++Q+D      +K     +    R + +   T S+KK   T   + I +NGN+
Sbjct: 1167 NKEIKSIMRQRDYFHSKAKKSNLTVDWASHRCY-RNRATNSIKKAKATYNRKLIERNGND 1225


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/47 (31%), Positives = 18/47 (38%)
 Frame = +2

Query: 581 TTSVKKPDGTVETRRIVKNGNEVTEETVTSGPVTNIVNPTMDTMTPS 721
           TT+      T  T     N    T  T T+ P T    PT  T TP+
Sbjct: 136 TTTPNTTTTTPNTTTTSPNATTTTPNTTTTTPNTTTTTPTATTTTPT 182


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,692,966
Number of Sequences: 59808
Number of extensions: 569936
Number of successful extensions: 1935
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1924
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)