Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0612
         (660 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.9  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   5.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    22   5.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 260 EQIESRFYFQRPHRLCRSTLLACVTS*SPEYSERRQI 370
           EQ+  R  F  PHRL   +   C  + +P    R+ I
Sbjct: 594 EQLTWRRNFHGPHRLAARSRRCCYHAVAPGTDIRQSI 630


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 260 EQIESRFYFQRPHRLCRSTLLACVTS*SPEYSERRQI 370
           EQ+  R  F  PHRL   +   C  + +P    R+ I
Sbjct: 486 EQLTWRRNFHGPHRLAARSRRCCYHAVAPGTDIRQSI 522


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 120 SYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 224
           S FA++N       HS  VH+ G         SGS
Sbjct: 60  SVFAANNAEFPEFVHSGMVHNDGTQLMPSPTVSGS 94


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 120 SYFASHNTTREYIAHSSKVHSVGWSCDGRKLASGS 224
           S FA++N       HS  VH+ G         SGS
Sbjct: 60  SVFAANNAEFPEFVHSGMVHNDGTQLMPSPTVSGS 94


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,646
Number of Sequences: 336
Number of extensions: 3481
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)