Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0612
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.0  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/64 (20%), Positives = 31/64 (48%)
 Frame = +3

Query: 228 DKSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASHPDLLSTASGDKSVRIWDTRSHKCA 407
           D+S ++  + ++  + ++ +   TGS   L        LL +    ++V + D   ++C+
Sbjct: 252 DESTSLVCVAQACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALEAVTLEDNGIYRCS 311

Query: 408 ATIP 419
           A+ P
Sbjct: 312 ASNP 315


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/64 (20%), Positives = 31/64 (48%)
 Frame = +3

Query: 228 DKSVAIFNLERSRLSQDFIFKGHTGSVDQLCWHASHPDLLSTASGDKSVRIWDTRSHKCA 407
           D+S ++  + ++  + ++ +   TGS   L        LL +    ++V + D   ++C+
Sbjct: 252 DESTSLVCVAQACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVLALEAVTLEDNGIYRCS 311

Query: 408 ATIP 419
           A+ P
Sbjct: 312 ASNP 315


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 269 ESRFYFQRPHRLCRST 316
           E  FY +RP R C +T
Sbjct: 577 EVEFYKRRPQRACSTT 592


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 165 SSKVHSVGWSCDGRKLASGSFDKSV 239
           + ++HS+  S    KLA G  D SV
Sbjct: 17  TKEIHSISDSLVNAKLAFGFLDNSV 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,559
Number of Sequences: 438
Number of extensions: 3729
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)