Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0611
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    29   0.91 
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   3.7  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   8.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   8.5  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   8.5  

>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 438 NPIPRTCLTITRYQSQSILWWHYKFCNQKFF 530
           N +P T L +  Y S  I ++ ++FC QKFF
Sbjct: 191 NGLPATLLNVVPYVS--ICFFTFEFCKQKFF 219


>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 337 SFLPIVLRTEASSCELAVVLLTFNKYVLSFMLNKFFLI*FEYFTKITY 194
           S LPI+L  + SS ++  V    + +V +F  NKF     E F ++ +
Sbjct: 120 SSLPIILHPKFSSMQVRTVTSPKDAFVSAFEENKFHFAATESFFEMAF 167


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 275 QKNYRQFTRTSLRPENNWQETQQACL 352
           QK   +F  +  RP+  W E+  AC+
Sbjct: 604 QKKACEFLLSKQRPDGGWSESYMACV 629


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 110  TKDNNVIKITSKSFKNSYECSIHRN*STISYFCKIFKSNQ 229
            + D  +  + S+   NSY   IH N STI+     F+SNQ
Sbjct: 985  SSDTYLNVLNSEGAINSYSLDIHLNQSTINSI-DFFESNQ 1023


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 474 YQSQSILWWHYKFCNQKFFYCLFG*TSSWL-IW 569
           +    +L+ +Y+ C +KF  CL      W+ +W
Sbjct: 74  FSKDGLLYAYYELCQEKFEKCLKEDDEEWIELW 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,519
Number of Sequences: 5004
Number of extensions: 59233
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)