Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0611
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical
           protein C08A9.8 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 194 ISYFCKIFKSNQKKFIQHK*KYILIERQKNYRQFTRTSLRPENNWQETQQACLFF 358
           I Y  K  K+   K   +  KY +  R+K YR+F        + ++  +  CLFF
Sbjct: 93  IQYPNKQIKTKLLKLKSYSNKYKMFSRKKIYRKFLNIHCFKFHKFESLKAGCLFF 147


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -1

Query: 230 FDLI*IFYKNNLLYFNYGVLSIRKNF*MIYLLFLSHCCP*FVSVSVCPLNKARAKNLNST 51
           F L+ + Y N++ YF+   L    ++ MI LLFL+   P    +   P+     KN +  
Sbjct: 156 FLLLFLCYLNSIQYFSENNLQSLLSYYMILLLFLNIVLPLLTPLIYIPVMIVTRKNSHQH 215

Query: 50  MINLIFFVQFV 18
               I+  ++V
Sbjct: 216 SQQHIYLHEYV 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,957,831
Number of Sequences: 27780
Number of extensions: 327381
Number of successful extensions: 581
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)