Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0610
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   5.5  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.5  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    25   9.6  

>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +2

Query: 107 FNFYIIIIPRDDPSKRFLFSLVFFNGESILEMIFHYWIIFLFLVF 241
           F   +II+P      +++FS +FF G  I+ +I    I  L++ F
Sbjct: 565 FFILVIIVPLPMYGSKYIFSKLFFRG-WIIVIIIWTLIAALYITF 608


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -2

Query: 426 HRHLQRKCATHL*IEIQRSQYSYNGRPTLQTHCCFT 319
           H HL      HL    Q   Y  N R +    CCFT
Sbjct: 34  HMHLYHYEHIHLFTSSQSYMYHPNARFSYSPFCCFT 69


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 294 VPPPHLFLP*SSNA 335
           VPPPHL LP +S++
Sbjct: 255 VPPPHLILPTASSS 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,327
Number of Sequences: 5004
Number of extensions: 43499
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)