Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0610
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37356| Best HMM Match : Integrin_alpha (HMM E-Value=0.24)           29   3.3  
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)              29   3.3  
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_37356| Best HMM Match : Integrin_alpha (HMM E-Value=0.24)
          Length = 118

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 146 SKRFLFSLVFFNGESILEMIFHYWIIFLFLVF 241
           S+RF  S+ FF  +   E + H++ I LF VF
Sbjct: 38  SRRFCLSIFFFISKDKKEEVLHFFSIRLFKVF 69


>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
          Length = 951

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -1

Query: 529 NWVPGPPSSXXXXXXXLRWVDELTAHMVLSGYWSP*TSTT*MCHPPLDRNSKVSV*LQRS 350
           +W+PG PS        +R  D L  +  ++           +C  PL+   K+SV  +R 
Sbjct: 205 DWIPGEPSQKGEQCIGMRLKDSLNPYGSMADLNCK-QKHQFVCRKPLEAREKISVRRRRR 263

Query: 349 PHPSN 335
           P  +N
Sbjct: 264 PSAAN 268


>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1925

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 355 RSPHPSNALLLHGRNRWGGGTYPCGLTRGP 266
           R  + SNA  +HG  +W  G +PC   R P
Sbjct: 215 RHGYESNAWQMHGL-KWSQGEFPCNRIRPP 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,512,904
Number of Sequences: 59808
Number of extensions: 336054
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)