Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0610
(547 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068531-1|AAH68531.1| 856|Homo sapiens ATPase, H+ transporting... 31 3.5
AF112972-1|AAD04632.1| 856|Homo sapiens TJ6 protein. 31 3.5
BC013299-1|AAH13299.1| 473|Homo sapiens THUMP domain containing... 30 6.1
BC004163-1|AAH04163.1| 473|Homo sapiens THUMP domain containing... 30 6.1
AK057801-1|BAB71581.1| 244|Homo sapiens protein ( Homo sapiens ... 30 6.1
AF380579-1|AAL18606.1| 244|Homo sapiens SAM-dependent methyltra... 30 6.1
AF380578-1|AAL18605.1| 244|Homo sapiens SAM-dependent methyltra... 30 6.1
AF380577-1|AAL18604.1| 244|Homo sapiens SAM-dependent methyltra... 30 6.1
AF380576-2|AAL26318.1| 244|Homo sapiens SAM-dependent methyltra... 30 6.1
AF380576-1|AAL26317.1| 473|Homo sapiens SAM-dependent methyltra... 30 6.1
AC007246-1|AAX93065.1| 206|Homo sapiens unknown protein. 30 6.1
>BC068531-1|AAH68531.1| 856|Homo sapiens ATPase, H+ transporting,
lysosomal V0 subunit a2 protein.
Length = 856
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 92 NFKTKFNFYIIIIPRDDPSKRFLFSLVFFNGESILEMIFHYWIIF 226
+F+ KFN Y++ IP LF L F ++ MIF+ W++F
Sbjct: 576 HFRKKFNIYLVSIP------ELLFMLCIFG--YLIFMIFYKWLVF 612
>AF112972-1|AAD04632.1| 856|Homo sapiens TJ6 protein.
Length = 856
Score = 30.7 bits (66), Expect = 3.5
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 92 NFKTKFNFYIIIIPRDDPSKRFLFSLVFFNGESILEMIFHYWIIF 226
+F+ KFN Y++ IP LF L F ++ MIF+ W++F
Sbjct: 576 HFRKKFNIYLVSIP------ELLFMLCIFG--YLIFMIFYKWLVF 612
>BC013299-1|AAH13299.1| 473|Homo sapiens THUMP domain containing 2
protein.
Length = 473
Score = 29.9 bits (64), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 334 RLKGGATVVTILRPLNFYLKVGGTFTL*MSMDSSNHLTPC 453
+ K G + +IL+ + L VGGT L +S D LT C
Sbjct: 350 KFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDC 389
>BC004163-1|AAH04163.1| 473|Homo sapiens THUMP domain containing 2
protein.
Length = 473
Score = 29.9 bits (64), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 334 RLKGGATVVTILRPLNFYLKVGGTFTL*MSMDSSNHLTPC 453
+ K G + +IL+ + L VGGT L +S D LT C
Sbjct: 350 KFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDC 389
>AK057801-1|BAB71581.1| 244|Homo sapiens protein ( Homo sapiens
cDNA FLJ25072 fis, clone CBL05716. ).
Length = 244
Score = 29.9 bits (64), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 334 RLKGGATVVTILRPLNFYLKVGGTFTL*MSMDSSNHLTPC 453
+ K G + +IL+ + L VGGT L +S D LT C
Sbjct: 121 KFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDC 160
>AF380579-1|AAL18606.1| 244|Homo sapiens SAM-dependent
methyltransferase protein.
Length = 244
Score = 29.9 bits (64), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 334 RLKGGATVVTILRPLNFYLKVGGTFTL*MSMDSSNHLTPC 453
+ K G + +IL+ + L VGGT L +S D LT C
Sbjct: 121 KFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDC 160
>AF380578-1|AAL18605.1| 244|Homo sapiens SAM-dependent
methyltransferase protein.
Length = 244
Score = 29.9 bits (64), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 334 RLKGGATVVTILRPLNFYLKVGGTFTL*MSMDSSNHLTPC 453
+ K G + +IL+ + L VGGT L +S D LT C
Sbjct: 121 KFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDC 160
>AF380577-1|AAL18604.1| 244|Homo sapiens SAM-dependent
methyltransferase protein.
Length = 244
Score = 29.9 bits (64), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 334 RLKGGATVVTILRPLNFYLKVGGTFTL*MSMDSSNHLTPC 453
+ K G + +IL+ + L VGGT L +S D LT C
Sbjct: 121 KFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDC 160
>AF380576-2|AAL26318.1| 244|Homo sapiens SAM-dependent
methyltransferase protein.
Length = 244
Score = 29.9 bits (64), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 334 RLKGGATVVTILRPLNFYLKVGGTFTL*MSMDSSNHLTPC 453
+ K G + +IL+ + L VGGT L +S D LT C
Sbjct: 121 KFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDC 160
>AF380576-1|AAL26317.1| 473|Homo sapiens SAM-dependent
methyltransferase protein.
Length = 473
Score = 29.9 bits (64), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 334 RLKGGATVVTILRPLNFYLKVGGTFTL*MSMDSSNHLTPC 453
+ K G + +IL+ + L VGGT L +S D LT C
Sbjct: 350 KFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDC 389
>AC007246-1|AAX93065.1| 206|Homo sapiens unknown protein.
Length = 206
Score = 29.9 bits (64), Expect = 6.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 334 RLKGGATVVTILRPLNFYLKVGGTFTL*MSMDSSNHLTPC 453
+ K G + +IL+ + L VGGT L +S D LT C
Sbjct: 83 KFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDC 122
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,234,632
Number of Sequences: 237096
Number of extensions: 1754797
Number of successful extensions: 6233
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6233
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5364536570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -