Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0610
         (547 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical p...    29   2.2  
Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical p...    29   2.2  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    29   2.2  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    29   2.2  
U50309-1|AAG24137.1|  335|Caenorhabditis elegans Seven tm recept...    29   2.9  
Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z70718-10|CAA94679.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 152 RFLFSLVFFNGESILEMIFH--YWIIFLFLVFKSHC-FDVGRTSCES 283
           RFL     F+ ++IL M FH   W+ +L  V   +C F+V   + ES
Sbjct: 19  RFLLPQTLFSNKNILRMFFHIFMWLFYLSEVDSDNCSFNVHYITKES 65


>Z68879-11|CAA93090.1|  512|Caenorhabditis elegans Hypothetical
           protein C04G2.11 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 152 RFLFSLVFFNGESILEMIFH--YWIIFLFLVFKSHC-FDVGRTSCES 283
           RFL     F+ ++IL M FH   W+ +L  V   +C F+V   + ES
Sbjct: 19  RFLLPQTLFSNKNILRMFFHIFMWLFYLSEVDSDNCSFNVHYITKES 65


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -2

Query: 537 IGRIGYRAPPRVFFFFF---YCLDG 472
           IG  G+ APP VF FFF   YC  G
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYCNSG 372


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
 Frame = -2

Query: 537 IGRIGYRAPPRVFFFFF---YCLDG 472
           IG  G+ APP VF FFF   YC  G
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYCNSG 370


>U50309-1|AAG24137.1|  335|Caenorhabditis elegans Seven tm receptor
           protein 129 protein.
          Length = 335

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 464 AHCPHGVKWLLESIDIYNVNVPPT 393
           A C HG  +  + I IYN+ +PPT
Sbjct: 115 AVCRHGKLYYFDGIKIYNLFIPPT 138


>Z81453-6|CAH04639.1|  283|Caenorhabditis elegans Hypothetical
           protein B0250.10 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 132 LAMILRSVF-CFHSFFLMGNPFWK*YFTIGLYFYF*YSRVTV 254
           L +IL SVF C+ +F L+ + FW+    + L+    Y R  V
Sbjct: 10  LILILFSVFICYLNFLLLISIFWRKKIPVNLHMMLTYCRFGV 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,379,277
Number of Sequences: 27780
Number of extensions: 256771
Number of successful extensions: 521
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)