Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0610
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.2  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 354 RCNYTETFEFLSKGGWHIYVVDVYGLQ 434
           R N ++ F++L+  GW   +  V GL+
Sbjct: 218 RSNLSQPFQWLASDGWGRQIKLVEGLE 244


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 354 RCNYTETFEFLSKGGW 401
           RCN T  F ++   GW
Sbjct: 363 RCNATGAFSWIGSDGW 378


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 354 RCNYTETFEFLSKGGWHIYVVDVYGLQ 434
           R N ++ F++L+  GW   +  V GL+
Sbjct: 308 RSNLSQPFQWLASDGWGRQIKLVEGLE 334


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -2

Query: 147 EGSSRGIMII*KLNFVLKLLAL 82
           E SS   MII  LNF+L L  L
Sbjct: 268 EPSSTERMIIANLNFILHLFCL 289


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 191 ILEMIFHYWIIFLFLVFKSHCFDVGRTSCESARV 292
           +L M+F YW I+   V  +   + G  + +S+++
Sbjct: 260 MLVMLFFYWRIYNAAVSTTKAINQGFRTTKSSKM 293


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,503
Number of Sequences: 438
Number of extensions: 3275
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)