Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0609
         (514 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0RKP0 Cluster: Putative regulatory protein; n=1; Frank...    37   0.31 
UniRef50_Q6VUB6 Cluster: Glycine betaine transporter; n=1; Marin...    35   1.2  
UniRef50_A5ZUV3 Cluster: Putative uncharacterized protein; n=1; ...    34   1.7  
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    34   2.2  
UniRef50_Q3ZYG1 Cluster: Putative uncharacterized protein; n=3; ...    32   6.7  

>UniRef50_Q0RKP0 Cluster: Putative regulatory protein; n=1; Frankia
           alni ACN14a|Rep: Putative regulatory protein - Frankia
           alni (strain ACN14a)
          Length = 143

 Score = 36.7 bits (81), Expect = 0.31
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +3

Query: 69  LHDVIPSPWEPIVNILLSTYFIRKIGTRRAFGIEG--PMHRKIGTNAPDVLTFRLRRLQ 239
           LH     P  P+V+I+ S +    + T   FG +    + R+IGT  P VLT RLR+L+
Sbjct: 20  LHPQQACPVSPVVDIVFSRWTTPILWTLHTFGRQRFVELERRIGTITPKVLTQRLRQLE 78


>UniRef50_Q6VUB6 Cluster: Glycine betaine transporter; n=1;
           Marinococcus halophilus|Rep: Glycine betaine transporter
           - Marinococcus halophilus
          Length = 493

 Score = 34.7 bits (76), Expect = 1.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 322 FSSQLELTLWF*SCLIYCHFNYYFQIIRTLHLHFTSHI 435
           F+SQLE  +      ++ HF +YFQI+ TL L F  ++
Sbjct: 25  FTSQLEAAMTAAQAFVFAHFGWYFQILVTLLLIFAVYL 62


>UniRef50_A5ZUV3 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 363

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 377 ILIIISKLFEHFTFTSLHIYINELLFVSL 463
           IL+++ K F HFT  S+HI +  L F SL
Sbjct: 310 ILVVLQKYFNHFTTASVHIQMPALFFASL 338


>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 14/16 (87%), Positives = 15/16 (93%)
 Frame = +2

Query: 467 KTRGGARYPIRPIVSR 514
           + RGGARYPIRPIVSR
Sbjct: 258 RPRGGARYPIRPIVSR 273


>UniRef50_Q3ZYG1 Cluster: Putative uncharacterized protein; n=3;
           Dehalococcoides|Rep: Putative uncharacterized protein -
           Dehalococcoides sp. (strain CBDB1)
          Length = 296

 Score = 32.3 bits (70), Expect = 6.7
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -1

Query: 208 SGAFVPILRCIGPSIPKARRVP---IFLMKYVLNKMFTIGSHGEGITSCN 68
           +G F  +L     S+ KAR +    IFL+KY+ N    +GS   G  S N
Sbjct: 144 TGKFSEVLASSSHSVSKARELSSKLIFLLKYLPNLKIVLGSESNGSVSAN 193


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 510,032,510
Number of Sequences: 1657284
Number of extensions: 9637847
Number of successful extensions: 19416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19406
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31364627325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)